Blobology: exploring raw genome data for contaminants, symbionts and parasites using taxon-annotated GC-coverage plots

Blobology: exploring raw genome data for contaminants, symbionts and parasites using taxon-annotated GC-coverage plots

Generating the raw data for a de novo genome assembly project for a target eukaryotic species is relatively easy. This democratisation of access to large-scale data has allowed many research teams to plan to assemble the genomes of non-model organisms. These new genome targets are very different fro...

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Bibliographic Details
Main Authors: Sujai eKumar, Martin eJones, Georgios eKoutsovoulos, Michael eClarke, Mark eBlaxter
Format: Article
Language:English
Published: Frontiers Media S.A. 2013-11-01
Series:Frontiers in Genetics
Subjects:
Metagenomics
Parasites
Next-generation sequencing
contaminants
Assembly
symbionts
Online Access:http://journal.frontiersin.org/Journal/10.3389/fgene.2013.00237/full

Internet

http://journal.frontiersin.org/Journal/10.3389/fgene.2013.00237/full

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