3DeFDR: statistical methods for identifying cell type-specific looping interactions in 5C and Hi-C data

Abstract An important unanswered question in chromatin biology is the extent to which long-range looping interactions change across developmental models, genetic perturbations, drug treatments, and disease states. Computational tools for rigorous assessment of cell type-specific loops across multipl...

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Bibliographic Details
Main Authors: Lindsey R. Fernandez, Thomas G. Gilgenast, Jennifer E. Phillips-Cremins
Format: Article
Language:English
Published: BMC 2020-08-01
Series:Genome Biology
Subjects:
Online Access:http://link.springer.com/article/10.1186/s13059-020-02061-9