Discriminating between HuR and TTP binding sites using the k-spectrum kernel method.

BACKGROUND:The RNA binding proteins (RBPs) human antigen R (HuR) and Tristetraprolin (TTP) are known to exhibit competitive binding but have opposing effects on the bound messenger RNA (mRNA). How cells discriminate between the two proteins is an interesting problem. Machine learning approaches, suc...

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Bibliographic Details
Main Authors: Shweta Bhandare, Debra S Goldberg, Robin Dowell
Format: Article
Language:English
Published: Public Library of Science (PLoS) 2017-01-01
Series:PLoS ONE
Online Access:http://europepmc.org/articles/PMC5363848?pdf=render