Human Tissue-Resident Memory T Cells Are Defined by Core Transcriptional and Functional Signatures in Lymphoid and Mucosal Sites

Tissue-resident memory T cells (TRMs) in mice mediate optimal protective immunity to infection and vaccination, while in humans, the existence and properties of TRMs remain unclear. Here, we use a unique human tissue resource to determine whether human tissue memory T cells constitute a distinct sub...

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Main Authors: Brahma V. Kumar, Wenji Ma, Michelle Miron, Tomer Granot, Rebecca S. Guyer, Dustin J. Carpenter, Takashi Senda, Xiaoyun Sun, Siu-Hong Ho, Harvey Lerner, Amy L. Friedman, Yufeng Shen, Donna L. Farber
Format: Article
Language:English
Published: Elsevier 2017-09-01
Series:Cell Reports
Subjects:
Online Access:http://www.sciencedirect.com/science/article/pii/S2211124717312202
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spelling doaj-f3e9780754764601b97c47d562f49b9a2020-11-24T21:29:17ZengElsevierCell Reports2211-12472017-09-0120122921293410.1016/j.celrep.2017.08.078Human Tissue-Resident Memory T Cells Are Defined by Core Transcriptional and Functional Signatures in Lymphoid and Mucosal SitesBrahma V. Kumar0Wenji Ma1Michelle Miron2Tomer Granot3Rebecca S. Guyer4Dustin J. Carpenter5Takashi Senda6Xiaoyun Sun7Siu-Hong Ho8Harvey Lerner9Amy L. Friedman10Yufeng Shen11Donna L. Farber12Columbia Center for Translational Immunology, Columbia University Medical Center, New York, NY 10032, USADepartment of Systems Biology, Columbia University Medical Center, New York, NY 10032, USAColumbia Center for Translational Immunology, Columbia University Medical Center, New York, NY 10032, USAColumbia Center for Translational Immunology, Columbia University Medical Center, New York, NY 10032, USAColumbia Center for Translational Immunology, Columbia University Medical Center, New York, NY 10032, USAColumbia Center for Translational Immunology, Columbia University Medical Center, New York, NY 10032, USAColumbia Center for Translational Immunology, Columbia University Medical Center, New York, NY 10032, USADepartment of Systems Biology, Columbia University Medical Center, New York, NY 10032, USAColumbia Center for Translational Immunology, Columbia University Medical Center, New York, NY 10032, USALiveOnNY, New York, NY 10001, USALiveOnNY, New York, NY 10001, USADepartment of Systems Biology, Columbia University Medical Center, New York, NY 10032, USAColumbia Center for Translational Immunology, Columbia University Medical Center, New York, NY 10032, USATissue-resident memory T cells (TRMs) in mice mediate optimal protective immunity to infection and vaccination, while in humans, the existence and properties of TRMs remain unclear. Here, we use a unique human tissue resource to determine whether human tissue memory T cells constitute a distinct subset in diverse mucosal and lymphoid tissues. We identify a core transcriptional profile within the CD69+ subset of memory CD4+ and CD8+ T cells in lung and spleen that is distinct from that of CD69− TEM cells in tissues and circulation and defines human TRMs based on homology to the transcriptional profile of mouse CD8+ TRMs. Human TRMs in diverse sites exhibit increased expression of adhesion and inhibitory molecules, produce both pro-inflammatory and regulatory cytokines, and have reduced turnover compared with circulating TEM, suggesting unique adaptations for in situ immunity. Together, our results provide a unifying signature for human TRM and a blueprint for designing tissue-targeted immunotherapies.http://www.sciencedirect.com/science/article/pii/S2211124717312202human immunologymemory T cellsRNA-seqmucosal immunity
collection DOAJ
language English
format Article
sources DOAJ
author Brahma V. Kumar
Wenji Ma
Michelle Miron
Tomer Granot
Rebecca S. Guyer
Dustin J. Carpenter
Takashi Senda
Xiaoyun Sun
Siu-Hong Ho
Harvey Lerner
Amy L. Friedman
Yufeng Shen
Donna L. Farber
spellingShingle Brahma V. Kumar
Wenji Ma
Michelle Miron
Tomer Granot
Rebecca S. Guyer
Dustin J. Carpenter
Takashi Senda
Xiaoyun Sun
Siu-Hong Ho
Harvey Lerner
Amy L. Friedman
Yufeng Shen
Donna L. Farber
Human Tissue-Resident Memory T Cells Are Defined by Core Transcriptional and Functional Signatures in Lymphoid and Mucosal Sites
Cell Reports
human immunology
memory T cells
RNA-seq
mucosal immunity
author_facet Brahma V. Kumar
Wenji Ma
Michelle Miron
Tomer Granot
Rebecca S. Guyer
Dustin J. Carpenter
Takashi Senda
Xiaoyun Sun
Siu-Hong Ho
Harvey Lerner
Amy L. Friedman
Yufeng Shen
Donna L. Farber
author_sort Brahma V. Kumar
title Human Tissue-Resident Memory T Cells Are Defined by Core Transcriptional and Functional Signatures in Lymphoid and Mucosal Sites
title_short Human Tissue-Resident Memory T Cells Are Defined by Core Transcriptional and Functional Signatures in Lymphoid and Mucosal Sites
title_full Human Tissue-Resident Memory T Cells Are Defined by Core Transcriptional and Functional Signatures in Lymphoid and Mucosal Sites
title_fullStr Human Tissue-Resident Memory T Cells Are Defined by Core Transcriptional and Functional Signatures in Lymphoid and Mucosal Sites
title_full_unstemmed Human Tissue-Resident Memory T Cells Are Defined by Core Transcriptional and Functional Signatures in Lymphoid and Mucosal Sites
title_sort human tissue-resident memory t cells are defined by core transcriptional and functional signatures in lymphoid and mucosal sites
publisher Elsevier
series Cell Reports
issn 2211-1247
publishDate 2017-09-01
description Tissue-resident memory T cells (TRMs) in mice mediate optimal protective immunity to infection and vaccination, while in humans, the existence and properties of TRMs remain unclear. Here, we use a unique human tissue resource to determine whether human tissue memory T cells constitute a distinct subset in diverse mucosal and lymphoid tissues. We identify a core transcriptional profile within the CD69+ subset of memory CD4+ and CD8+ T cells in lung and spleen that is distinct from that of CD69− TEM cells in tissues and circulation and defines human TRMs based on homology to the transcriptional profile of mouse CD8+ TRMs. Human TRMs in diverse sites exhibit increased expression of adhesion and inhibitory molecules, produce both pro-inflammatory and regulatory cytokines, and have reduced turnover compared with circulating TEM, suggesting unique adaptations for in situ immunity. Together, our results provide a unifying signature for human TRM and a blueprint for designing tissue-targeted immunotherapies.
topic human immunology
memory T cells
RNA-seq
mucosal immunity
url http://www.sciencedirect.com/science/article/pii/S2211124717312202
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