Using RNA-Seq for Genomic Scaffold Placement, Correcting Assemblies, and Genetic Map Creation in a Common Brassica rapa Mapping Population

Using RNA-Seq for Genomic Scaffold Placement, Correcting Assemblies, and Genetic Map Creation in a Common Brassica rapa Mapping Population

Brassica rapa is a model species for agronomic, ecological, evolutionary, and translational studies. Here, we describe high-density SNP discovery and genetic map construction for a B. rapa recombinant inbred line (RIL) population derived from field collected RNA sequencing (RNA-Seq) data. This high-...

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Bibliographic Details
Main Authors: R. J. Cody Markelz, Michael F. Covington, Marcus T. Brock, Upendra K. Devisetty, Daniel J. Kliebenstein, Cynthia Weinig, Julin N. Maloof
Format: Article
Language:English
Published: Oxford University Press 2017-07-01
Series:G3: Genes, Genomes, Genetics
Subjects:
RNA-Seq
genetic map
Brassica rapa
genome assembly correction
Online Access:http://g3journal.org/lookup/doi/10.1534/g3.117.043000

Internet

http://g3journal.org/lookup/doi/10.1534/g3.117.043000

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