Computational solution to automatically map metabolite libraries in the context of genome scale metabolic networks

Computational solution to automatically map metabolite libraries in the context of genome scale metabolic networks

This article describes a generic programmatic method for mapping chemical compound libraries on organism-specific metabolic networks from various databases (KEGG, BioCyc) and flat file formats (SBML and Matlab files). We show how this pipeline was successfully applied to decipher the coverage of che...

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Bibliographic Details
Main Authors: Benjamin eMerlet, Nils ePaulhe, Florence eVinson, Clément eFrainay, Maxime eChazalviel, Nathalie ePoupin, Yoann eGloaguen, Franck eGiacomoni, Fabien eJourdan
Format: Article
Language:English
Published: Frontiers Media S.A. 2016-02-01
Series:Frontiers in Molecular Biosciences
Subjects:
Metabolic Networks
web services
chemical library
SaaS (Software as a Service)
metabolome mapping
Online Access:http://journal.frontiersin.org/Journal/10.3389/fmolb.2016.00002/full

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http://journal.frontiersin.org/Journal/10.3389/fmolb.2016.00002/full

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