Unified Least Squares Methods for the Evaluation of Diagnostic Tests With the Gold Standard

The article proposes a unified least squares method to estimate the receiver operating characteristic (ROC) parameters for continuous and ordinal diagnostic tests, such as cancer biomarkers. The method is based on a linear model framework using the empirically estimated sensitivities and specificiti...

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Main Authors: Liansheng Larry Tang, Ao Yuan, John Collins, Xuan Che, Leighton Chan
Format: Article
Language:English
Published: SAGE Publishing 2017-02-01
Series:Cancer Informatics
Online Access:https://doi.org/10.1177/1176935116686063
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spelling doaj-ea4f51ea43eb4cb08d57e56c8cc5b86a2020-11-25T03:40:12ZengSAGE PublishingCancer Informatics1176-93512017-02-011610.1177/117693511668606310.1177_1176935116686063Unified Least Squares Methods for the Evaluation of Diagnostic Tests With the Gold StandardLiansheng Larry Tang0Ao Yuan1John Collins2Xuan Che3Leighton Chan4Rehabilitation Medicine Department, NIH Clinical Center, Bethesda, MD, USADepartment of Biostatistics, Bioinformatics and Biomathematics, Georgetown University, Washington, DC, USARehabilitation Medicine Department, NIH Clinical Center, Bethesda, MD, USARehabilitation Medicine Department, NIH Clinical Center, Bethesda, MD, USARehabilitation Medicine Department, NIH Clinical Center, Bethesda, MD, USAThe article proposes a unified least squares method to estimate the receiver operating characteristic (ROC) parameters for continuous and ordinal diagnostic tests, such as cancer biomarkers. The method is based on a linear model framework using the empirically estimated sensitivities and specificities as input “data.” It gives consistent estimates for regression and accuracy parameters when the underlying continuous test results are normally distributed after some monotonic transformation. The key difference between the proposed method and the method of Tang and Zhou lies in the response variable. The response variable in the latter is transformed empirical ROC curves at different thresholds. It takes on many values for continuous test results, but few values for ordinal test results. The limited number of values for the response variable makes it impractical for ordinal data. However, the response variable in the proposed method takes on many more distinct values so that the method yields valid estimates for ordinal data. Extensive simulation studies are conducted to investigate and compare the finite sample performance of the proposed method with an existing method, and the method is then used to analyze 2 real cancer diagnostic example as an illustration.https://doi.org/10.1177/1176935116686063
collection DOAJ
language English
format Article
sources DOAJ
author Liansheng Larry Tang
Ao Yuan
John Collins
Xuan Che
Leighton Chan
spellingShingle Liansheng Larry Tang
Ao Yuan
John Collins
Xuan Che
Leighton Chan
Unified Least Squares Methods for the Evaluation of Diagnostic Tests With the Gold Standard
Cancer Informatics
author_facet Liansheng Larry Tang
Ao Yuan
John Collins
Xuan Che
Leighton Chan
author_sort Liansheng Larry Tang
title Unified Least Squares Methods for the Evaluation of Diagnostic Tests With the Gold Standard
title_short Unified Least Squares Methods for the Evaluation of Diagnostic Tests With the Gold Standard
title_full Unified Least Squares Methods for the Evaluation of Diagnostic Tests With the Gold Standard
title_fullStr Unified Least Squares Methods for the Evaluation of Diagnostic Tests With the Gold Standard
title_full_unstemmed Unified Least Squares Methods for the Evaluation of Diagnostic Tests With the Gold Standard
title_sort unified least squares methods for the evaluation of diagnostic tests with the gold standard
publisher SAGE Publishing
series Cancer Informatics
issn 1176-9351
publishDate 2017-02-01
description The article proposes a unified least squares method to estimate the receiver operating characteristic (ROC) parameters for continuous and ordinal diagnostic tests, such as cancer biomarkers. The method is based on a linear model framework using the empirically estimated sensitivities and specificities as input “data.” It gives consistent estimates for regression and accuracy parameters when the underlying continuous test results are normally distributed after some monotonic transformation. The key difference between the proposed method and the method of Tang and Zhou lies in the response variable. The response variable in the latter is transformed empirical ROC curves at different thresholds. It takes on many values for continuous test results, but few values for ordinal test results. The limited number of values for the response variable makes it impractical for ordinal data. However, the response variable in the proposed method takes on many more distinct values so that the method yields valid estimates for ordinal data. Extensive simulation studies are conducted to investigate and compare the finite sample performance of the proposed method with an existing method, and the method is then used to analyze 2 real cancer diagnostic example as an illustration.
url https://doi.org/10.1177/1176935116686063
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