Benchmarking transposable element annotation methods for creation of a streamlined, comprehensive pipeline

Benchmarking transposable element annotation methods for creation of a streamlined, comprehensive pipeline

Abstract Background Sequencing technology and assembly algorithms have matured to the point that high-quality de novo assembly is possible for large, repetitive genomes. Current assemblies traverse transposable elements (TEs) and provide an opportunity for comprehensive annotation of TEs. Numerous m...

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Bibliographic Details
Main Authors: Shujun Ou, Weija Su, Yi Liao, Kapeel Chougule, Jireh R. A. Agda, Adam J. Hellinga, Carlos Santiago Blanco Lugo, Tyler A. Elliott, Doreen Ware, Thomas Peterson, Ning Jiang, Candice N. Hirsch, Matthew B. Hufford
Format: Article
Language:English
Published: BMC 2019-12-01
Series:Genome Biology
Subjects:
Transposable element
Annotation
Genome
Benchmarking
Pipeline
Online Access:https://doi.org/10.1186/s13059-019-1905-y

Internet

https://doi.org/10.1186/s13059-019-1905-y

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