An Overview of Network-Based and -Free Approaches for Stochastic Simulation of Biochemical Systems

Stochastic simulation has been widely used to model the dynamics of biochemical reaction networks. Several algorithms have been proposed that are exact solutions of the chemical master equation, following the work of Gillespie. These stochastic simulation approaches can be broadly classified into tw...

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Bibliographic Details
Main Authors: Abhishekh Gupta, Pedro Mendes
Format: Article
Language:English
Published: MDPI AG 2018-01-01
Series:Computation
Subjects:
Online Access:http://www.mdpi.com/2079-3197/6/1/9