SLR-superscaffolder: a de novo scaffolding tool for synthetic long reads using a top-to-bottom scheme

SLR-superscaffolder: a de novo scaffolding tool for synthetic long reads using a top-to-bottom scheme

Abstract Background Synthetic long reads (SLR) with long-range co-barcoding information are now widely applied in genomics research. Although several tools have been developed for each specific SLR technique, a robust standalone scaffolder with high efficiency is warranted for hybrid genome assembly...

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Bibliographic Details
Main Authors: Lidong Guo, Mengyang Xu, Wenchao Wang, Shengqiang Gu, Xia Zhao, Fang Chen, Ou Wang, Xun Xu, Inge Seim, Guangyi Fan, Li Deng, Xin Liu
Format: Article
Language:English
Published: BMC 2021-03-01
Series:BMC Bioinformatics
Subjects:
Genome assembly
Synthetic long reads
Next-generation sequencing
Scaffolding
Online Access:https://doi.org/10.1186/s12859-021-04081-z

Internet

https://doi.org/10.1186/s12859-021-04081-z

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