Hybrid transcriptome sequencing approach improved assembly and gene annotation in Cynara cardunculus (L.)

Hybrid transcriptome sequencing approach improved assembly and gene annotation in Cynara cardunculus (L.)

Abstract Background The investigation of transcriptome profiles using short reads in non-model organisms, which lack of well-annotated genomes, is limited by partial gene reconstruction and isoform detection. In contrast, long-reads sequencing techniques revealed their potential to generate complete...

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Bibliographic Details
Main Authors: Giuseppe D. Puglia, Andrey D. Prjibelski, Domenico Vitale, Elena Bushmanova, Karl J. Schmid, Salvatore A. Raccuia
Format: Article
Language:English
Published: BMC 2020-08-01
Series:BMC Genomics
Subjects:
Hybrid-seq
RNA-seq
de novo transcriptome assembly
Cynara cardunculus
Inflorescence development
Alternatively spliced isoforms
Online Access:http://link.springer.com/article/10.1186/s12864-020-6670-5

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http://link.springer.com/article/10.1186/s12864-020-6670-5

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