SamQL: a structured query language and filtering tool for the SAM/BAM file format

Abstract Background The Sequence Alignment/Map Format Specification (SAM) is one of the most widely adopted file formats in bioinformatics and many researchers use it daily. Several tools, including most high-throughput sequencing read aligners, use it as their primary output and many more tools hav...

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Bibliographic Details
Main Authors: Christopher T. Lee, Manolis Maragkakis
Format: Article
Language:English
Published: BMC 2021-10-01
Series:BMC Bioinformatics
Subjects:
SQL
SAM
BAM
Online Access:https://doi.org/10.1186/s12859-021-04390-3