Automatic extraction of microorganisms and their habitats from free text using text mining workflows

In this paper we illustrate the usage of text mining workflows to automatically extract instances of microorganisms and their habitats from free text; these entries can then be curated and added to different databases. To this end, we use a Conditional Random Field (CRF) based classifier, as part of...

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Bibliographic Details
Main Authors: Kolluru BalaKrishna, Nakjang Sirintra, Hirt Robert P., Wipat Anil, Ananiadou Sophia
Format: Article
Language:English
Published: De Gruyter 2011-06-01
Series:Journal of Integrative Bioinformatics
Online Access:https://doi.org/10.1515/jib-2011-184