A Bi-Exponential Repair Algorithm for Radiation-Induced Double-Strand Breaks: Application to Simulation of Chromosome Aberrations

Background: Radiation induces DNA double-strand breaks (DSBs), and chromosome aberrations (CA) form during the DSBs repair process. Several methods have been used to model the repair kinetics of DSBs including the bi-exponential model, i.e., <i>N(t) = N<sub>1</sub>exp(&#8722;t/...

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Bibliographic Details
Main Authors: Ianik Plante, Tony Slaba, Zarana Shavers, Megumi Hada
Format: Article
Language:English
Published: MDPI AG 2019-11-01
Series:Genes
Subjects:
Online Access:https://www.mdpi.com/2073-4425/10/11/936
Description
Summary:Background: Radiation induces DNA double-strand breaks (DSBs), and chromosome aberrations (CA) form during the DSBs repair process. Several methods have been used to model the repair kinetics of DSBs including the bi-exponential model, i.e., <i>N(t) = N<sub>1</sub>exp(&#8722;t/&#964;<sub>1</sub>) + N<sub>2</sub>exp(&#8722;t/&#964;<sub>2</sub>)</i>, where <i>N(t)</i> is the number of breaks at time <i>t</i>, and <i>N<sub>1</sub></i>, <i>N<sub>2</sub></i>, <i>&#964;<sub>1</sub></i> and <i>&#964;<sub>2</sub></i> are parameters. This bi-exponential fit for DSB decay suggests that some breaks are repaired rapidly and other, more complex breaks, take longer to repair. Methods: The bi-exponential repair kinetics model is implemented into a recent simulation code called RITCARD (Radiation Induced Tracks, Chromosome Aberrations, Repair, and Damage). RITCARD simulates the geometric configuration of human chromosomes, radiation-induced breaks, their repair, and the creation of various categories of CAs. The bi-exponential repair relies on a computational algorithm that is shown to be mathematically exact. To categorize breaks as complex or simple, a threshold for the local (voxel) dose was used. Results: The main findings are: i) the curves for the kinetics of restitution of DSBs are mostly independent of dose; ii) the fraction of unrepaired breaks increases with the linear energy transfer (LET) of the incident radiation; iii) the simulated dose&#8722;response curves for simple reciprocal chromosome exchanges that are linear-quadratic; iv) the alpha coefficient of the dose&#8722;response curve peaks at about 100 keV/&#181;m.
ISSN:2073-4425