Automatic Quantification of Immunohistochemically Stained Cell Nuclei Using Unsupervised Image Analysis

A method for quantification of images of immunohistochemically stained cell nuclei by computing area proportions is presented. The image is transformed by a principal component transform. The resulting first component image is used to segment the objects from the background using dynamic thresholdin...

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Main Authors: Petter Ranefall, Kenneth Wester, Ewert Bengtsson
Format: Article
Language:English
Published: Hindawi Limited 1998-01-01
Series:Analytical Cellular Pathology
Online Access:http://dx.doi.org/10.1155/1998/608293
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spelling doaj-aba2c564f50945738899cd66c8c9f68b2020-11-24T22:25:50ZengHindawi LimitedAnalytical Cellular Pathology0921-89121878-36511998-01-01161294310.1155/1998/608293Automatic Quantification of Immunohistochemically Stained Cell Nuclei Using Unsupervised Image AnalysisPetter Ranefall0Kenneth Wester1Ewert Bengtsson2Centre for Image Analysis, Uppsala University, SwedenDepartment of Pathology, Uppsala University, SwedenCentre for Image Analysis, Uppsala University, SwedenA method for quantification of images of immunohistochemically stained cell nuclei by computing area proportions is presented. The image is transformed by a principal component transform. The resulting first component image is used to segment the objects from the background using dynamic thresholding of the P2/A‐histogram, where P2/A is a global roundness measure. Then the image is transformed into principal component hue, defined as the angle around the first principal component. This image is used to segment positive and negative objects. The method is fully automatic and the principal component approach makes it robust with respect to illumination and focus settings. An independent test set consisting of images grabbed with different focus and illumination for each field of view was used to test the method, and the proposed method showed less variation than the intraoperator variation using supervised Maximum Likelihood classification.http://dx.doi.org/10.1155/1998/608293
collection DOAJ
language English
format Article
sources DOAJ
author Petter Ranefall
Kenneth Wester
Ewert Bengtsson
spellingShingle Petter Ranefall
Kenneth Wester
Ewert Bengtsson
Automatic Quantification of Immunohistochemically Stained Cell Nuclei Using Unsupervised Image Analysis
Analytical Cellular Pathology
author_facet Petter Ranefall
Kenneth Wester
Ewert Bengtsson
author_sort Petter Ranefall
title Automatic Quantification of Immunohistochemically Stained Cell Nuclei Using Unsupervised Image Analysis
title_short Automatic Quantification of Immunohistochemically Stained Cell Nuclei Using Unsupervised Image Analysis
title_full Automatic Quantification of Immunohistochemically Stained Cell Nuclei Using Unsupervised Image Analysis
title_fullStr Automatic Quantification of Immunohistochemically Stained Cell Nuclei Using Unsupervised Image Analysis
title_full_unstemmed Automatic Quantification of Immunohistochemically Stained Cell Nuclei Using Unsupervised Image Analysis
title_sort automatic quantification of immunohistochemically stained cell nuclei using unsupervised image analysis
publisher Hindawi Limited
series Analytical Cellular Pathology
issn 0921-8912
1878-3651
publishDate 1998-01-01
description A method for quantification of images of immunohistochemically stained cell nuclei by computing area proportions is presented. The image is transformed by a principal component transform. The resulting first component image is used to segment the objects from the background using dynamic thresholding of the P2/A‐histogram, where P2/A is a global roundness measure. Then the image is transformed into principal component hue, defined as the angle around the first principal component. This image is used to segment positive and negative objects. The method is fully automatic and the principal component approach makes it robust with respect to illumination and focus settings. An independent test set consisting of images grabbed with different focus and illumination for each field of view was used to test the method, and the proposed method showed less variation than the intraoperator variation using supervised Maximum Likelihood classification.
url http://dx.doi.org/10.1155/1998/608293
work_keys_str_mv AT petterranefall automaticquantificationofimmunohistochemicallystainedcellnucleiusingunsupervisedimageanalysis
AT kennethwester automaticquantificationofimmunohistochemicallystainedcellnucleiusingunsupervisedimageanalysis
AT ewertbengtsson automaticquantificationofimmunohistochemicallystainedcellnucleiusingunsupervisedimageanalysis
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