CALISTA: Clustering and LINEAGE Inference in Single-Cell Transcriptional Analysis

CALISTA: Clustering and LINEAGE Inference in Single-Cell Transcriptional Analysis

We present Clustering and Lineage Inference in Single-Cell Transcriptional Analysis (CALISTA), a numerically efficient and highly scalable toolbox for an end-to-end analysis of single-cell transcriptomic profiles. CALISTA includes four essential single-cell analyses for cell differentiation studies,...

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Bibliographic Details
Main Authors: Nan Papili Gao, Thomas Hartmann, Tao Fang, Rudiyanto Gunawan
Format: Article
Language:English
Published: Frontiers Media S.A. 2020-02-01
Series:Frontiers in Bioengineering and Biotechnology
Subjects:
single-cell
gene expression
transcriptional bursts
random dropouts
cell clustering
lineage progression
Online Access:https://www.frontiersin.org/article/10.3389/fbioe.2020.00018/full

Internet

https://www.frontiersin.org/article/10.3389/fbioe.2020.00018/full

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