Assessment of network inference methods: how to cope with an underdetermined problem.

by Caroline Siegenthaler, Rudiyanto Gunawan
Published 2014-01-01

Special Issue on “Biological Networks”

by Rudiyanto Gunawan, Neda Bagheri
Published 2018-11-01

Elucidating Cellular Population Dynamics by Molecular Density Function Perturbations

by Thanneer Malai Perumal, Rudiyanto Gunawan
Published 2018-01-01

CALISTA: Clustering and LINEAGE Inference in Single-Cell Transcriptional Analysis

by Nan Papili Gao, Nan Papili Gao, Thomas Hartmann, Tao Fang, Rudiyanto Gunawan, Rudiyanto Gunawan
Published 2020-02-01

A systems-based framework to computationally describe putative transcription factors and signaling pathways regulating glycan biosynthesis

by Theodore Groth, Rudiyanto Gunawan, Sriram Neelamegham
Published 2021-07-01

Ensemble inference and inferability of gene regulatory networks.

by S M Minhaz Ud-Dean, Rudiyanto Gunawan
Published 2014-01-01

Multi-Objective Optimization of Experiments Using Curvature and Fisher Information Matrix

by Erica Manesso, Srinath Sridharan, Rudiyanto Gunawan
Published 2017-11-01

Ensemble Kinetic Modeling of Metabolic Networks from Dynamic Metabolic Profiles

by Gengjie Jia, Gregory Stephanopoulos, Rudiyanto Gunawan
Published 2012-11-01

Role of direct repeat and stem-loop motifs in mtDNA deletions: cause or coincidence?

by Lakshmi Narayanan Lakshmanan, Jan Gruber, Barry Halliwell, Rudiyanto Gunawan
Published 2012-01-01

Context-Dependent Role of Mitochondrial Fusion-Fission in Clonal Expansion of mtDNA Mutations.

by Zhi Yang Tam, Jan Gruber, Barry Halliwell, Rudiyanto Gunawan
Published 2015-05-01

Mathematical modeling of the role of mitochondrial fusion and fission in mitochondrial DNA maintenance.

by Zhi Yang Tam, Jan Gruber, Barry Halliwell, Rudiyanto Gunawan
Published 2013-01-01

Stochastic drift in mitochondrial DNA point mutations: a novel perspective ex silico.

by Suresh Kumar Poovathingal, Jan Gruber, Barry Halliwell, Rudiyanto Gunawan
Published 2009-11-01

Thermodynamic analysis of DNA hybridization signatures near mitochondrial DNA deletion breakpoints

by Lakshmi Narayanan Lakshmanan, Zhuangli Yee, Barry Halliwell, Jan Gruber, Rudiyanto Gunawan
Published 2021-03-01

DeltaNeTS+: elucidating the mechanism of drugs and diseases using gene expression and transcriptional regulatory networks

by Heeju Noh, Ziyi Hua, Panagiotis Chrysinas, Jason E. Shoemaker, Rudiyanto Gunawan
Published 2021-03-01

Glycosylation Flux Analysis of Immunoglobulin G in Chinese Hamster Ovary Perfusion Cell Culture

by Sandro Hutter, Moritz Wolf, Nan Papili Gao, Dario Lepori, Thea Schweigler, Massimo Morbidelli, Rudiyanto Gunawan
Published 2018-10-01

Single-Cell-Based Analysis Highlights a Surge in Cell-to-Cell Molecular Variability Preceding Irreversible Commitment in a Differentiation Process.

by Angélique Richard, Loïs Boullu, Ulysse Herbach, Arnaud Bonnafoux, Valérie Morin, Elodie Vallin, Anissa Guillemin, Nan Papili Gao, Rudiyanto Gunawan, Jérémie Cosette, Ophélie Arnaud, Jean-Jacques Kupiec, Thibault Espinasse, Sandrine Gonin-Giraud, Olivier Gandrillon
Published 2016-12-01

Metabolic stress is a primary pathogenic event in transgenic Caenorhabditis elegans expressing pan-neuronal human amyloid beta

by Emelyne Teo, Sudharshan Ravi, Diogo Barardo, Hyung-Seok Kim, Sheng Fong, Amaury Cazenave-Gassiot, Tsze Yin Tan, Jianhong Ching, Jean-Paul Kovalik, Markus R Wenk, Rudiyanto Gunawan, Philip K Moore, Barry Halliwell, Nicholas Tolwinski, Jan Gruber
Published 2019-10-01