Uncovering Novel Pathways for Enhancing Hyaluronan Synthesis in Recombinant <i>Lactococcus lactis</i>: Genome-Scale Metabolic Modeling and Experimental Validation

Hyaluronan (HA), a glycosaminoglycan with important medical applications, is commercially produced from pathogenic microbial sources. The metabolism of HA-producing recombinant generally regarded as safe (GRAS) systems needs to be more strategically engineered to achieve yields higher than native pr...

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Main Authors: Abinaya Badri, Karthik Raman, Guhan Jayaraman
Format: Article
Language:English
Published: MDPI AG 2019-06-01
Series:Processes
Subjects:
Online Access:https://www.mdpi.com/2227-9717/7/6/343
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spelling doaj-991198dca4654fccacd964aa12abaf582020-11-25T01:16:08ZengMDPI AGProcesses2227-97172019-06-017634310.3390/pr7060343pr7060343Uncovering Novel Pathways for Enhancing Hyaluronan Synthesis in Recombinant <i>Lactococcus lactis</i>: Genome-Scale Metabolic Modeling and Experimental ValidationAbinaya Badri0Karthik Raman1Guhan Jayaraman2Department of Biotechnology, Bhupat and Jyoti Mehta School of Biosciences, Indian Institute of Technology Madras, Chennai 600 036, IndiaDepartment of Biotechnology, Bhupat and Jyoti Mehta School of Biosciences, Indian Institute of Technology Madras, Chennai 600 036, IndiaDepartment of Biotechnology, Bhupat and Jyoti Mehta School of Biosciences, Indian Institute of Technology Madras, Chennai 600 036, IndiaHyaluronan (HA), a glycosaminoglycan with important medical applications, is commercially produced from pathogenic microbial sources. The metabolism of HA-producing recombinant generally regarded as safe (GRAS) systems needs to be more strategically engineered to achieve yields higher than native producers. Here, we use a genome-scale model (GEM) to account for the entire metabolic network of the cell while predicting strategies to improve HA production. We analyze the metabolic network of <i>Lactococcus lactis</i> adapted to produce HA and identify non-conventional strategies to enhance HA flux. We also show experimental verification of one of the predicted strategies. We thus identified an alternate route for enhancement of HA synthesis, originating from the nucleoside inosine, that can function in parallel with the traditionally known route from glucose. Adopting this strategy resulted in a 2.8-fold increase in HA yield. The strategies identified and the experimental results show that the cell is capable of involving a larger subset of metabolic pathways in HA production. Apart from being the first report to use a nucleoside to improve HA production, we demonstrate the role of experimental validation in model refinement and strategy improvisation. Overall, we point out that well-constructed GEMs could be used to derive efficient strategies to improve the biosynthesis of high-value products.https://www.mdpi.com/2227-9717/7/6/343hyaluronic acidgenome-scale metabolic network model<i>Lactococcus lactis</i>metabolic engineeringinosine supplementation
collection DOAJ
language English
format Article
sources DOAJ
author Abinaya Badri
Karthik Raman
Guhan Jayaraman
spellingShingle Abinaya Badri
Karthik Raman
Guhan Jayaraman
Uncovering Novel Pathways for Enhancing Hyaluronan Synthesis in Recombinant <i>Lactococcus lactis</i>: Genome-Scale Metabolic Modeling and Experimental Validation
Processes
hyaluronic acid
genome-scale metabolic network model
<i>Lactococcus lactis</i>
metabolic engineering
inosine supplementation
author_facet Abinaya Badri
Karthik Raman
Guhan Jayaraman
author_sort Abinaya Badri
title Uncovering Novel Pathways for Enhancing Hyaluronan Synthesis in Recombinant <i>Lactococcus lactis</i>: Genome-Scale Metabolic Modeling and Experimental Validation
title_short Uncovering Novel Pathways for Enhancing Hyaluronan Synthesis in Recombinant <i>Lactococcus lactis</i>: Genome-Scale Metabolic Modeling and Experimental Validation
title_full Uncovering Novel Pathways for Enhancing Hyaluronan Synthesis in Recombinant <i>Lactococcus lactis</i>: Genome-Scale Metabolic Modeling and Experimental Validation
title_fullStr Uncovering Novel Pathways for Enhancing Hyaluronan Synthesis in Recombinant <i>Lactococcus lactis</i>: Genome-Scale Metabolic Modeling and Experimental Validation
title_full_unstemmed Uncovering Novel Pathways for Enhancing Hyaluronan Synthesis in Recombinant <i>Lactococcus lactis</i>: Genome-Scale Metabolic Modeling and Experimental Validation
title_sort uncovering novel pathways for enhancing hyaluronan synthesis in recombinant <i>lactococcus lactis</i>: genome-scale metabolic modeling and experimental validation
publisher MDPI AG
series Processes
issn 2227-9717
publishDate 2019-06-01
description Hyaluronan (HA), a glycosaminoglycan with important medical applications, is commercially produced from pathogenic microbial sources. The metabolism of HA-producing recombinant generally regarded as safe (GRAS) systems needs to be more strategically engineered to achieve yields higher than native producers. Here, we use a genome-scale model (GEM) to account for the entire metabolic network of the cell while predicting strategies to improve HA production. We analyze the metabolic network of <i>Lactococcus lactis</i> adapted to produce HA and identify non-conventional strategies to enhance HA flux. We also show experimental verification of one of the predicted strategies. We thus identified an alternate route for enhancement of HA synthesis, originating from the nucleoside inosine, that can function in parallel with the traditionally known route from glucose. Adopting this strategy resulted in a 2.8-fold increase in HA yield. The strategies identified and the experimental results show that the cell is capable of involving a larger subset of metabolic pathways in HA production. Apart from being the first report to use a nucleoside to improve HA production, we demonstrate the role of experimental validation in model refinement and strategy improvisation. Overall, we point out that well-constructed GEMs could be used to derive efficient strategies to improve the biosynthesis of high-value products.
topic hyaluronic acid
genome-scale metabolic network model
<i>Lactococcus lactis</i>
metabolic engineering
inosine supplementation
url https://www.mdpi.com/2227-9717/7/6/343
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AT karthikraman uncoveringnovelpathwaysforenhancinghyaluronansynthesisinrecombinantilactococcuslactisigenomescalemetabolicmodelingandexperimentalvalidation
AT guhanjayaraman uncoveringnovelpathwaysforenhancinghyaluronansynthesisinrecombinantilactococcuslactisigenomescalemetabolicmodelingandexperimentalvalidation
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