Bridging Scales in Alzheimer's Disease: Biological Framework for Brain Simulation With The Virtual Brain

Despite the acceleration of knowledge and data accumulation in neuroscience over the last years, the highly prevalent neurodegenerative disease of AD remains a growing problem. Alzheimer's Disease (AD) is the most common cause of dementia and represents the most prevalent neurodegenerative dise...

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Main Authors: Leon Stefanovski, Jil Mona Meier, Roopa Kalsank Pai, Paul Triebkorn, Tristram Lett, Leon Martin, Konstantin Bülau, Martin Hofmann-Apitius, Ana Solodkin, Anthony Randal McIntosh, Petra Ritter
Format: Article
Language:English
Published: Frontiers Media S.A. 2021-04-01
Series:Frontiers in Neuroinformatics
Subjects:
Online Access:https://www.frontiersin.org/articles/10.3389/fninf.2021.630172/full
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author Leon Stefanovski
Leon Stefanovski
Jil Mona Meier
Jil Mona Meier
Roopa Kalsank Pai
Roopa Kalsank Pai
Roopa Kalsank Pai
Paul Triebkorn
Paul Triebkorn
Paul Triebkorn
Tristram Lett
Tristram Lett
Leon Martin
Leon Martin
Konstantin Bülau
Konstantin Bülau
Martin Hofmann-Apitius
Ana Solodkin
Anthony Randal McIntosh
Petra Ritter
Petra Ritter
Petra Ritter
Petra Ritter
Petra Ritter
spellingShingle Leon Stefanovski
Leon Stefanovski
Jil Mona Meier
Jil Mona Meier
Roopa Kalsank Pai
Roopa Kalsank Pai
Roopa Kalsank Pai
Paul Triebkorn
Paul Triebkorn
Paul Triebkorn
Tristram Lett
Tristram Lett
Leon Martin
Leon Martin
Konstantin Bülau
Konstantin Bülau
Martin Hofmann-Apitius
Ana Solodkin
Anthony Randal McIntosh
Petra Ritter
Petra Ritter
Petra Ritter
Petra Ritter
Petra Ritter
Bridging Scales in Alzheimer's Disease: Biological Framework for Brain Simulation With The Virtual Brain
Frontiers in Neuroinformatics
Alzheimer's disease
The Virtual Brain
brain simulation
multi-scale brain modeling
connectomics
author_facet Leon Stefanovski
Leon Stefanovski
Jil Mona Meier
Jil Mona Meier
Roopa Kalsank Pai
Roopa Kalsank Pai
Roopa Kalsank Pai
Paul Triebkorn
Paul Triebkorn
Paul Triebkorn
Tristram Lett
Tristram Lett
Leon Martin
Leon Martin
Konstantin Bülau
Konstantin Bülau
Martin Hofmann-Apitius
Ana Solodkin
Anthony Randal McIntosh
Petra Ritter
Petra Ritter
Petra Ritter
Petra Ritter
Petra Ritter
author_sort Leon Stefanovski
title Bridging Scales in Alzheimer's Disease: Biological Framework for Brain Simulation With The Virtual Brain
title_short Bridging Scales in Alzheimer's Disease: Biological Framework for Brain Simulation With The Virtual Brain
title_full Bridging Scales in Alzheimer's Disease: Biological Framework for Brain Simulation With The Virtual Brain
title_fullStr Bridging Scales in Alzheimer's Disease: Biological Framework for Brain Simulation With The Virtual Brain
title_full_unstemmed Bridging Scales in Alzheimer's Disease: Biological Framework for Brain Simulation With The Virtual Brain
title_sort bridging scales in alzheimer's disease: biological framework for brain simulation with the virtual brain
publisher Frontiers Media S.A.
series Frontiers in Neuroinformatics
issn 1662-5196
publishDate 2021-04-01
description Despite the acceleration of knowledge and data accumulation in neuroscience over the last years, the highly prevalent neurodegenerative disease of AD remains a growing problem. Alzheimer's Disease (AD) is the most common cause of dementia and represents the most prevalent neurodegenerative disease. For AD, disease-modifying treatments are presently lacking, and the understanding of disease mechanisms continues to be incomplete. In the present review, we discuss candidate contributing factors leading to AD, and evaluate novel computational brain simulation methods to further disentangle their potential roles. We first present an overview of existing computational models for AD that aim to provide a mechanistic understanding of the disease. Next, we outline the potential to link molecular aspects of neurodegeneration in AD with large-scale brain network modeling using The Virtual Brain (www.thevirtualbrain.org), an open-source, multiscale, whole-brain simulation neuroinformatics platform. Finally, we discuss how this methodological approach may contribute to the understanding, improved diagnostics, and treatment optimization of AD.
topic Alzheimer's disease
The Virtual Brain
brain simulation
multi-scale brain modeling
connectomics
url https://www.frontiersin.org/articles/10.3389/fninf.2021.630172/full
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spelling doaj-91d465ae934b4aef9c34f85b6e8789282021-04-01T07:25:40ZengFrontiers Media S.A.Frontiers in Neuroinformatics1662-51962021-04-011510.3389/fninf.2021.630172630172Bridging Scales in Alzheimer's Disease: Biological Framework for Brain Simulation With The Virtual BrainLeon Stefanovski0Leon Stefanovski1Jil Mona Meier2Jil Mona Meier3Roopa Kalsank Pai4Roopa Kalsank Pai5Roopa Kalsank Pai6Paul Triebkorn7Paul Triebkorn8Paul Triebkorn9Tristram Lett10Tristram Lett11Leon Martin12Leon Martin13Konstantin Bülau14Konstantin Bülau15Martin Hofmann-Apitius16Ana Solodkin17Anthony Randal McIntosh18Petra Ritter19Petra Ritter20Petra Ritter21Petra Ritter22Petra Ritter23Berlin Institute of Health at Charité - Universitätsmedizin Berlin, Berlin, GermanyCharité - Universitätsmedizin Berlin, Corporate Member of Freie Universität Berlin and Humboldt-Universität zu Berlin, Department of Neurology with Experimental Neurology, Brain Simulation Section, Berlin, GermanyBerlin Institute of Health at Charité - Universitätsmedizin Berlin, Berlin, GermanyCharité - Universitätsmedizin Berlin, Corporate Member of Freie Universität Berlin and Humboldt-Universität zu Berlin, Department of Neurology with Experimental Neurology, Brain Simulation Section, Berlin, GermanyBerlin Institute of Health at Charité - Universitätsmedizin Berlin, Berlin, GermanyCharité - Universitätsmedizin Berlin, Corporate Member of Freie Universität Berlin and Humboldt-Universität zu Berlin, Department of Neurology with Experimental Neurology, Brain Simulation Section, Berlin, GermanyBernstein Center for Computational Neuroscience Berlin, Berlin, GermanyBerlin Institute of Health at Charité - Universitätsmedizin Berlin, Berlin, GermanyCharité - Universitätsmedizin Berlin, Corporate Member of Freie Universität Berlin and Humboldt-Universität zu Berlin, Department of Neurology with Experimental Neurology, Brain Simulation Section, Berlin, GermanyInstitut de Neurosciences des Systèmes, Aix Marseille Université, Marseille, FranceBerlin Institute of Health at Charité - Universitätsmedizin Berlin, Berlin, GermanyCharité - Universitätsmedizin Berlin, Corporate Member of Freie Universität Berlin and Humboldt-Universität zu Berlin, Department of Neurology with Experimental Neurology, Brain Simulation Section, Berlin, GermanyBerlin Institute of Health at Charité - Universitätsmedizin Berlin, Berlin, GermanyCharité - Universitätsmedizin Berlin, Corporate Member of Freie Universität Berlin and Humboldt-Universität zu Berlin, Department of Neurology with Experimental Neurology, Brain Simulation Section, Berlin, GermanyBerlin Institute of Health at Charité - Universitätsmedizin Berlin, Berlin, GermanyCharité - Universitätsmedizin Berlin, Corporate Member of Freie Universität Berlin and Humboldt-Universität zu Berlin, Department of Neurology with Experimental Neurology, Brain Simulation Section, Berlin, GermanyFraunhofer Institute for Algorithms and Scientific Computing SCAI, Sankt Augustin, GermanyBehavioral and Brain Sciences, University of Texas at Dallas, Dallas, TX, United StatesBaycrest Health Sciences, Rotman Research Institute, Toronto, ON, CanadaBerlin Institute of Health at Charité - Universitätsmedizin Berlin, Berlin, GermanyCharité - Universitätsmedizin Berlin, Corporate Member of Freie Universität Berlin and Humboldt-Universität zu Berlin, Department of Neurology with Experimental Neurology, Brain Simulation Section, Berlin, GermanyBernstein Center for Computational Neuroscience Berlin, Berlin, GermanyEinstein Center for Neuroscience Berlin, Berlin, GermanyEinstein Center Digital Future, Berlin, GermanyDespite the acceleration of knowledge and data accumulation in neuroscience over the last years, the highly prevalent neurodegenerative disease of AD remains a growing problem. Alzheimer's Disease (AD) is the most common cause of dementia and represents the most prevalent neurodegenerative disease. For AD, disease-modifying treatments are presently lacking, and the understanding of disease mechanisms continues to be incomplete. In the present review, we discuss candidate contributing factors leading to AD, and evaluate novel computational brain simulation methods to further disentangle their potential roles. We first present an overview of existing computational models for AD that aim to provide a mechanistic understanding of the disease. Next, we outline the potential to link molecular aspects of neurodegeneration in AD with large-scale brain network modeling using The Virtual Brain (www.thevirtualbrain.org), an open-source, multiscale, whole-brain simulation neuroinformatics platform. Finally, we discuss how this methodological approach may contribute to the understanding, improved diagnostics, and treatment optimization of AD.https://www.frontiersin.org/articles/10.3389/fninf.2021.630172/fullAlzheimer's diseaseThe Virtual Brainbrain simulationmulti-scale brain modelingconnectomics