'HypothesisFinder:' a strategy for the detection of speculative statements in scientific text.

by Ashutosh Malhotra, Erfan Younesi, Harsha Gurulingappa, Martin Hofmann-Apitius
Published 2013-01-01

Variational Autoencoder Modular Bayesian Networks for Simulation of Heterogeneous Clinical Study Data

by Luise Gootjes-Dreesbach, Meemansa Sood, Meemansa Sood, Akrishta Sahay, Martin Hofmann-Apitius, Martin Hofmann-Apitius, Holger Fröhlich, Holger Fröhlich, Holger Fröhlich
Published 2020-05-01

Quantifying mechanisms in neurodegenerative diseases (NDDs) using candidate mechanism perturbation amplitude (CMPA) algorithm

by Reagon Karki, Alpha Tom Kodamullil, Charles Tapley Hoyt, Martin Hofmann-Apitius
Published 2019-10-01

Detecting miRNA Mentions and Relations in Biomedical Literature [version 3; referees: 2 approved, 1 approved with reservations]

by Shweta Bagewadi, Tamara Bobić, Martin Hofmann-Apitius, Juliane Fluck, Roman Klinger
Published 2015-10-01

Detecting miRNA Mentions and Relations in Biomedical Literature [v2; ref status: indexed, http://f1000r.es/4wg]

by Shweta Bagewadi, Tamara Bobić, Martin Hofmann-Apitius, Juliane Fluck, Roman Klinger
Published 2014-12-01

Computational Modelling Approaches on Epigenetic Factors in Neurodegenerative and Autoimmune Diseases and Their Mechanistic Analysis

by Afroza Khanam Irin, Alpha Tom Kodamullil, Michaela Gündel, Martin Hofmann-Apitius
Published 2015-01-01

Corrigendum: The Impact of Pathway Database Choice on Statistical Enrichment Analysis and Predictive Modeling

by Sarah Mubeen, Sarah Mubeen, Charles Tapley Hoyt, Charles Tapley Hoyt, André Gemünd, Martin Hofmann-Apitius, Martin Hofmann-Apitius, Holger Fröhlich, Daniel Domingo-Fernández, Daniel Domingo-Fernández
Published 2020-04-01

The Impact of Pathway Database Choice on Statistical Enrichment Analysis and Predictive Modeling

by Sarah Mubeen, Sarah Mubeen, Charles Tapley Hoyt, Charles Tapley Hoyt, André Gemünd, Martin Hofmann-Apitius, Martin Hofmann-Apitius, Holger Fröhlich, Daniel Domingo-Fernández, Daniel Domingo-Fernández
Published 2019-11-01

PS4DR: a multimodal workflow for identification and prioritization of drugs based on pathway signatures

by Mohammad Asif Emon, Daniel Domingo-Fernández, Charles Tapley Hoyt, Martin Hofmann-Apitius
Published 2020-06-01

Drug2ways: Reasoning over causal paths in biological networks for drug discovery.

by Daniel Rivas-Barragan, Sarah Mubeen, Francesc Guim Bernat, Martin Hofmann-Apitius, Daniel Domingo-Fernández
Published 2020-12-01

PathMe: merging and exploring mechanistic pathway knowledge

by Daniel Domingo-Fernández, Sarah Mubeen, Josep Marín-Llaó, Charles Tapley Hoyt, Martin Hofmann-Apitius
Published 2019-05-01

Challenges of Integrative Disease Modeling in Alzheimer's Disease

by Sepehr Golriz Khatami, Sepehr Golriz Khatami, Christine Robinson, Christine Robinson, Colin Birkenbihl, Colin Birkenbihl, Daniel Domingo-Fernández, Daniel Domingo-Fernández, Charles Tapley Hoyt, Charles Tapley Hoyt, Martin Hofmann-Apitius, Martin Hofmann-Apitius
Published 2020-01-01

Insights into the Folding of Disulfide-Rich μ‑Conotoxins

by Ajay Abisheck Paul George, Pascal Heimer, Astrid Maaß, Jan Hamaekers, Martin Hofmann-Apitius, Arijit Biswas, Diana Imhof
Published 2018-10-01

Linking COVID-19 and Heme-Driven Pathophysiologies: A Combined Computational–Experimental Approach

by Marie-Thérèse Hopp, Daniel Domingo-Fernández, Yojana Gadiya, Milena S. Detzel, Regina Graf, Benjamin F. Schmalohr, Alpha T. Kodamullil, Diana Imhof, Martin Hofmann-Apitius
Published 2021-04-01

Pathway based analysis of genes and interactions influencing porcine testis samples from boars with divergent androstenone content in back fat.

by Sudeep Sahadevan, Asep Gunawan, Ernst Tholen, Christine Große-Brinkhaus, Dawit Tesfaye, Karl Schellander, Martin Hofmann-Apitius, Mehmet Ulas Cinar, Muhammad Jasim Uddin, Muhammad Jasim Uddin
Published 2014-01-01

A Computational Approach for Mapping Heme Biology in the Context of Hemolytic Disorders

by Farah Humayun, Farah Humayun, Daniel Domingo-Fernández, Ajay Abisheck Paul George, Marie-Thérèse Hopp, Benjamin F. Syllwasschy, Milena S. Detzel, Charles Tapley Hoyt, Martin Hofmann-Apitius, Diana Imhof
Published 2020-03-01

Bioinformatics Mining and Modeling Methods for the Identification of Disease Mechanisms in Neurodegenerative Disorders

by Martin Hofmann-Apitius, Gordon Ball, Stephan Gebel, Shweta Bagewadi, Bernard de Bono, Reinhard Schneider, Matt Page, Alpha Tom Kodamullil, Erfan Younesi, Christian Ebeling, Jesper Tegnér, Luc Canard
Published 2015-12-01

Knowledge retrieval from PubMed abstracts and electronic medical records with the Multiple Sclerosis Ontology.

by Ashutosh Malhotra, Michaela Gündel, Abdul Mateen Rajput, Heinz-Theodor Mevissen, Albert Saiz, Xavier Pastor, Raimundo Lozano-Rubi, Elena H Martinez-Lapiscina, Irati Zubizarreta, Bernd Mueller, Ekaterina Kotelnikova, Luca Toldo, Martin Hofmann-Apitius, Pablo Villoslada
Published 2015-01-01

Big data and data repurposing - using existing data to answer new questions in vascular dementia research

by Fergus N. Doubal, Myzoon Ali, G. David Batty, Andreas Charidimou, Maria Eriksdotter, Martin Hofmann-Apitius, Yun-Hee Kim, Deborah A. Levine, Gillian Mead, Hermann A. M. Mucke, Craig W. Ritchie, Charlotte J. Roberts, Tom C. Russ, Robert Stewart, William Whiteley, Terence J. Quinn
Published 2017-04-01

Bridging Scales in Alzheimer's Disease: Biological Framework for Brain Simulation With The Virtual Brain

by Leon Stefanovski, Leon Stefanovski, Jil Mona Meier, Jil Mona Meier, Roopa Kalsank Pai, Roopa Kalsank Pai, Roopa Kalsank Pai, Paul Triebkorn, Paul Triebkorn, Paul Triebkorn, Tristram Lett, Tristram Lett, Leon Martin, Leon Martin, Konstantin Bülau, Konstantin Bülau, Martin Hofmann-Apitius, Ana Solodkin, Anthony Randal McIntosh, Petra Ritter, Petra Ritter, Petra Ritter, Petra Ritter, Petra Ritter
Published 2021-04-01