DOPA: GPU-based protein alignment using database and memory access optimizations
<p>Abstract</p> <p>Background</p> <p><it>Smith-Waterman (S-W) </it>algorithm is an optimal sequence alignment method for biological databases, but its computational complexity makes it too slow for practical purposes. Heuristics based approximate methods lik...
| Main Authors: | , , |
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| Format: | Article |
| Language: | English |
| Published: |
BMC
2011-07-01
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| Series: | BMC Research Notes |
| Online Access: | http://www.biomedcentral.com/1756-0500/4/261 |