Benchmark datasets for phylogenomic pipeline validation, applications for foodborne pathogen surveillance

Background As next generation sequence technology has advanced, there have been parallel advances in genome-scale analysis programs for determining evolutionary relationships as proxies for epidemiological relationship in public health. Most new programs skip traditional steps of ortholog determinat...

Full description

Bibliographic Details
Main Authors: Ruth E. Timme, Hugh Rand, Martin Shumway, Eija K. Trees, Mustafa Simmons, Richa Agarwala, Steven Davis, Glenn E. Tillman, Stephanie Defibaugh-Chavez, Heather A. Carleton, William A. Klimke, Lee S. Katz
Format: Article
Language:English
Published: PeerJ Inc. 2017-10-01
Series:PeerJ
Subjects:
Online Access:https://peerj.com/articles/3893.pdf