Optimal Relabeling of Water Molecules and Single-Molecule Entropy Estimation

Estimation of solvent entropy from equilibrium molecular dynamics simulations is a long-standing problem in statistical mechanics. In recent years, methods that estimate entropy using <i>k</i>-th nearest neighbours (kNN) have been applied to internal degrees of freedom in biomolecular si...

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Bibliographic Details
Main Authors: Federico Fogolari, Gennaro Esposito
Format: Article
Language:English
Published: MDPI AG 2021-06-01
Series:Biophysica
Subjects:
Online Access:https://www.mdpi.com/2673-4125/1/3/21