Quality control of next-generation sequencing data without a reference

Quality control of next-generation sequencing data without a reference

Next-generation sequencing (NGS) technologies have dramatically expanded the breadth of genomics. Genome-scale data, once restricted to a small number of biomedical model organisms, can now be generated for virtually any species at remarkable speed and low cost. Yet non-model organisms often lack a...

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Bibliographic Details
Main Authors: Urmi H Trivedi, Timothée eCézard, Stephen eBridgett, Anna eMontazam, Jenna eNichols, Mark eBlaxter, Karim eGharbi
Format: Article
Language:English
Published: Frontiers Media S.A. 2014-05-01
Series:Frontiers in Genetics
Subjects:
Quality control
mate pair
Illumina sequencing
Insert size
de novo assembly
PCR duplicates
Online Access:http://journal.frontiersin.org/Journal/10.3389/fgene.2014.00111/full

Internet

http://journal.frontiersin.org/Journal/10.3389/fgene.2014.00111/full

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