Outcome of Different Sequencing and Assembly Approaches on the Detection of Plasmids and Localization of Antimicrobial Resistance Genes in Commensal <i>Escherichia coli</i>

Outcome of Different Sequencing and Assembly Approaches on the Detection of Plasmids and Localization of Antimicrobial Resistance Genes in Commensal <i>Escherichia coli</i>

Antimicrobial resistance (AMR) is a major threat to public health worldwide. Currently, AMR typing changes from phenotypic testing to whole-genome sequence (WGS)-based detection of resistance determinants for a better understanding of the isolate diversity and elements involved in gene transmission...

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Bibliographic Details
Main Authors: Katharina Juraschek, Maria Borowiak, Simon H. Tausch, Burkhard Malorny, Annemarie Käsbohrer, Saria Otani, Stefan Schwarz, Diana Meemken, Carlus Deneke, Jens Andre Hammerl
Format: Article
Language:English
Published: MDPI AG 2021-03-01
Series:Microorganisms
Subjects:
AMR
mobile genetic elements
<i>qnrS</i>
hybrid assembly
long-read sequencing
short-read sequencing
Online Access:https://www.mdpi.com/2076-2607/9/3/598

Internet

https://www.mdpi.com/2076-2607/9/3/598

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