Evaluation of Seven Different RNA-Seq Alignment Tools Based on Experimental Data from the Model Plant <i>Arabidopsis thaliana</i>

Evaluation of Seven Different RNA-Seq Alignment Tools Based on Experimental Data from the Model Plant <i>Arabidopsis thaliana</i>

Quantification of gene expression is crucial to connect genome sequences with phenotypic and physiological data. RNA-Sequencing (RNA-Seq) has taken a prominent role in the study of transcriptomic reactions of plants to various environmental and genetic perturbations. However, comparative tests of di...

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Bibliographic Details
Main Authors: Stephanie Schaarschmidt, Axel Fischer, Ellen Zuther, Dirk K. Hincha
Format: Article
Language:English
Published: MDPI AG 2020-03-01
Series:International Journal of Molecular Sciences
Subjects:
<i>arabidopsis thaliana</i>
differential gene expression
natural genetic variation
read mapping tools
rna-seq
Online Access:https://www.mdpi.com/1422-0067/21/5/1720

Internet

https://www.mdpi.com/1422-0067/21/5/1720

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