setsApp for Cytoscape: Set operations for Cytoscape Nodes and Edges [v2; ref status: indexed, http://f1000r.es/5lz]

setsApp for Cytoscape: Set operations for Cytoscape Nodes and Edges [v2; ref status: indexed, http://f1000r.es/5lz]

setsApp (http://apps.cytoscape.org/apps/setsapp) is a relatively simple Cytoscape 3 app for users to handle groups of nodes and/or edges. It supports several important biological workflows and enables various set operations. setsApp provides basic tools to create sets of nodes or edges, import or ex...

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Bibliographic Details
Main Authors: John H. Morris, Samad Lotia, Allan Wu, Nadezhda T. Doncheva, Mario Albrecht, Alexander R. Pico, Thomas E Ferrin
Format: Article
Language:English
Published: F1000 Research Ltd 2015-08-01
Series:F1000Research
Subjects:
Bioinformatics
Online Access:http://f1000research.com/articles/3-149/v2
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record_format Article
spelling doaj-56b71169ac2f488ebcbd76e202d541712020-11-25T03:05:56ZengF1000 Research LtdF1000Research2046-14022015-08-01310.12688/f1000research.4392.27271setsApp for Cytoscape: Set operations for Cytoscape Nodes and Edges [v2; ref status: indexed, http://f1000r.es/5lz]John H. Morris0Samad Lotia1Allan Wu2Nadezhda T. Doncheva3Mario Albrecht4Alexander R. Pico5Thomas E Ferrin6Resource for Biocomputing, Visualization, and Informatics, University of California, San Francisco, CA 94143, USAGladstone Institutes, San Francisco, CA, USAResource for Biocomputing, Visualization, and Informatics, University of California, San Francisco, CA 94143, USAMax Planck Institute for Informatics, Saarbrücken, 66123, GermanyBioTechMed-Graz, Graz, 8036, AustriaGladstone Institutes, San Francisco, CA, USAResource for Biocomputing, Visualization, and Informatics, University of California, San Francisco, CA 94143, USAsetsApp (http://apps.cytoscape.org/apps/setsapp) is a relatively simple Cytoscape 3 app for users to handle groups of nodes and/or edges. It supports several important biological workflows and enables various set operations. setsApp provides basic tools to create sets of nodes or edges, import or export sets, and perform standard set operations (union, difference, intersection) on those sets. Automatic set partitioning and layout functions are also provided. The sets functionality is also exposed to users and app developers in the form of a set of commands that can be used for scripting purposes or integrated in other Cytoscape apps.http://f1000research.com/articles/3-149/v2Bioinformatics
collection DOAJ
language English
format Article
sources DOAJ
author John H. Morris
Samad Lotia
Allan Wu
Nadezhda T. Doncheva
Mario Albrecht
Alexander R. Pico
Thomas E Ferrin
spellingShingle John H. Morris
Samad Lotia
Allan Wu
Nadezhda T. Doncheva
Mario Albrecht
Alexander R. Pico
Thomas E Ferrin
setsApp for Cytoscape: Set operations for Cytoscape Nodes and Edges [v2; ref status: indexed, http://f1000r.es/5lz]
F1000Research
Bioinformatics
author_facet John H. Morris
Samad Lotia
Allan Wu
Nadezhda T. Doncheva
Mario Albrecht
Alexander R. Pico
Thomas E Ferrin
author_sort John H. Morris
title setsApp for Cytoscape: Set operations for Cytoscape Nodes and Edges [v2; ref status: indexed, http://f1000r.es/5lz]
title_short setsApp for Cytoscape: Set operations for Cytoscape Nodes and Edges [v2; ref status: indexed, http://f1000r.es/5lz]
title_full setsApp for Cytoscape: Set operations for Cytoscape Nodes and Edges [v2; ref status: indexed, http://f1000r.es/5lz]
title_fullStr setsApp for Cytoscape: Set operations for Cytoscape Nodes and Edges [v2; ref status: indexed, http://f1000r.es/5lz]
title_full_unstemmed setsApp for Cytoscape: Set operations for Cytoscape Nodes and Edges [v2; ref status: indexed, http://f1000r.es/5lz]
title_sort setsapp for cytoscape: set operations for cytoscape nodes and edges [v2; ref status: indexed, http://f1000r.es/5lz]
publisher F1000 Research Ltd
series F1000Research
issn 2046-1402
publishDate 2015-08-01
description setsApp (http://apps.cytoscape.org/apps/setsapp) is a relatively simple Cytoscape 3 app for users to handle groups of nodes and/or edges. It supports several important biological workflows and enables various set operations. setsApp provides basic tools to create sets of nodes or edges, import or export sets, and perform standard set operations (union, difference, intersection) on those sets. Automatic set partitioning and layout functions are also provided. The sets functionality is also exposed to users and app developers in the form of a set of commands that can be used for scripting purposes or integrated in other Cytoscape apps.
topic Bioinformatics
url http://f1000research.com/articles/3-149/v2
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