Copycat Layout: Network layout alignment via Cytoscape Automation [version 1; referees: 2 approved]

by Brett Settle, David Otasek, John H Morris, Barry Demchak
Published 2018-06-01

aMatReader: Importing adjacency matrices via Cytoscape Automation [version 2; referees: 2 approved]

by Brett Settle, David Otasek, John H Morris, Barry Demchak
Published 2018-08-01

Copycat Layout: Network layout alignment via Cytoscape Automation [version 2; referees: 2 approved]

by Brett Settle, David Otasek, John H Morris, Barry Demchak
Published 2018-08-01

aMatReader: Importing adjacency matrices via Cytoscape Automation [version 1; referees: 2 approved]

by Brett Settle, David Otasek, John H Morris, Barry Demchak
Published 2018-06-01

Visualize omics data on networks with Omics Visualizer, a Cytoscape App [version 1; peer review: 2 approved]

by Marc Legeay, Nadezhda T. Doncheva, John H. Morris, Lars Juhl Jensen
Published 2020-02-01

Visualize omics data on networks with Omics Visualizer, a Cytoscape App [version 2; peer review: 2 approved]

by Marc Legeay, Nadezhda T. Doncheva, John H. Morris, Lars Juhl Jensen
Published 2020-06-01

enhancedGraphics: a Cytoscape app for enhanced node graphics [v1; ref status: indexed, http://f1000r.es/3oj]

by John H. Morris, Allan Kuchinsky, Thomas E. Ferrin, Alexander R. Pico
Published 2014-07-01

Ten simple rules to create biological network figures for communication.

by G Elisabeta Marai, Bruno Pinaud, Katja Bühler, Alexander Lex, John H Morris
Published 2019-09-01

Cytoscape Automation: empowering workflow-based network analysis

by David Otasek, John H. Morris, Jorge Bouças, Alexander R. Pico, Barry Demchak
Published 2019-09-01

setsApp: Set operations for Cytoscape Nodes and Edges [v1; ref status: indexed, http://f1000r.es/3ml]

by John H. Morris, Allan Wu, Nadezhda T. Doncheva, Mario Albrecht, Thomas E Ferrin
Published 2014-07-01

Using sequence similarity networks for visualization of relationships across diverse protein superfamilies.

by Holly J Atkinson, John H Morris, Thomas E Ferrin, Patricia C Babbitt
Published 2009-01-01

CyAnimator: Simple Animations of Cytoscape Networks [version 2; referees: 2 approved, 1 approved with reservations]

by John H. Morris, Dhameliya Vijay, Steven Federowicz, Alexander R. Pico, Thomas E. Ferrin
Published 2015-12-01

setsApp for Cytoscape: Set operations for Cytoscape Nodes and Edges [v2; ref status: indexed, http://f1000r.es/5lz]

by John H. Morris, Samad Lotia, Allan Wu, Nadezhda T. Doncheva, Mario Albrecht, Alexander R. Pico, Thomas E Ferrin
Published 2015-08-01

An Atlas of Peroxiredoxins Created Using an Active Site Profile-Based Approach to Functionally Relevant Clustering of Proteins.

by Angela F Harper, Janelle B Leuthaeuser, Patricia C Babbitt, John H Morris, Thomas E Ferrin, Leslie B Poole, Jacquelyn S Fetrow
Published 2017-02-01

Evaluation of methods to assign cell type labels to cell clusters from single-cell RNA-sequencing data [version 2; peer review: 1 approved, 2 approved with reservations]

by J. Javier Diaz-Mejia, Elaine C. Meng, Alexander R. Pico, Sonya A. MacParland, Troy Ketela, Trevor J. Pugh, Gary D. Bader, John H. Morris
Published 2019-08-01

Evaluation of methods to assign cell type labels to cell clusters from single-cell RNA-sequencing data [version 3; peer review: 2 approved, 1 approved with reservations]

by J. Javier Diaz-Mejia, Elaine C. Meng, Alexander R. Pico, Sonya A. MacParland, Troy Ketela, Trevor J. Pugh, Gary D. Bader, John H. Morris
Published 2019-10-01

Low-density lipoprotein receptor-related protein 1 (LRP1) is a novel receptor for apolipoprotein A4 (APOA4) in adipose tissue

by Jie Qu, Sarah Fourman, Maureen Fitzgerald, Min Liu, Supna Nair, Juan Oses-Prieto, Alma Burlingame, John H. Morris, W. Sean Davidson, Patrick Tso, Aditi Bhargava
Published 2021-06-01

Prediction of enzymatic pathways by integrative pathway mapping

by Sara Calhoun, Magdalena Korczynska, Daniel J Wichelecki, Brian San Francisco, Suwen Zhao, Dmitry A Rodionov, Matthew W Vetting, Nawar F Al-Obaidi, Henry Lin, Matthew J O'Meara, David A Scott, John H Morris, Daniel Russel, Steven C Almo, Andrei L Osterman, John A Gerlt, Matthew P Jacobson, Brian K Shoichet, Andrej Sali
Published 2018-01-01