HUPAN: a pan-genome analysis pipeline for human genomes

HUPAN: a pan-genome analysis pipeline for human genomes

Abstract The human reference genome is still incomplete, especially for those population-specific or individual-specific regions, which may have important functions. Here, we developed a HUman Pan-genome ANalysis (HUPAN) system to build the human pan-genome. We applied it to 185 deep sequencing and...

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Bibliographic Details
Main Authors: Zhongqu Duan, Yuyang Qiao, Jinyuan Lu, Huimin Lu, Wenmin Zhang, Fazhe Yan, Chen Sun, Zhiqiang Hu, Zhen Zhang, Guichao Li, Hongzhuan Chen, Zhen Xiang, Zhenggang Zhu, Hongyu Zhao, Yingyan Yu, Chaochun Wei
Format: Article
Language:English
Published: BMC 2019-07-01
Series:Genome Biology
Subjects:
Pan-genome
Core genome
Presence-absence variation (PAV)
Genome assembly
Population-specific variation
Online Access:http://link.springer.com/article/10.1186/s13059-019-1751-y

Internet

http://link.springer.com/article/10.1186/s13059-019-1751-y

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