A survey of the complex transcriptome from the highly polyploid sugarcane genome using full-length isoform sequencing and de novo assembly from short read sequencing

A survey of the complex transcriptome from the highly polyploid sugarcane genome using full-length isoform sequencing and de novo assembly from short read sequencing

Abstract Background Despite the economic importance of sugarcane in sugar and bioenergy production, there is not yet a reference genome available. Most of the sugarcane transcriptomic studies have been based on Saccharum officinarum gene indices (SoGI), expressed sequence tags (ESTs) and de novo ass...

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Bibliographic Details
Main Authors: Nam V. Hoang, Agnelo Furtado, Patrick J. Mason, Annelie Marquardt, Lakshmi Kasirajan, Prathima P. Thirugnanasambandam, Frederik C. Botha, Robert J. Henry
Format: Article
Language:English
Published: BMC 2017-05-01
Series:BMC Genomics
Subjects:
Sugarcane
Polyploid transcriptome
Transcriptome assembly
De novo assembly
Isoform sequencing
Hybrid assembly
Online Access:http://link.springer.com/article/10.1186/s12864-017-3757-8

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http://link.springer.com/article/10.1186/s12864-017-3757-8

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