Analysis of 3D genomic interactions identifies candidate host genes that transposable elements potentially regulate

Analysis of 3D genomic interactions identifies candidate host genes that transposable elements potentially regulate

Abstract Background The organization of chromatin in the nucleus plays an essential role in gene regulation. About half of the mammalian genome comprises transposable elements. Given their repetitive nature, reads associated with these elements are generally discarded or randomly distributed among e...

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Bibliographic Details
Main Authors: Ramya Raviram, Pedro P. Rocha, Vincent M. Luo, Emily Swanzey, Emily R. Miraldi, Edward B. Chuong, Cédric Feschotte, Richard Bonneau, Jane A. Skok
Format: Article
Language:English
Published: BMC 2018-12-01
Series:Genome Biology
Subjects:
Transposons
Chromosome conformation capture
Endogenous retroviruses
Nuclear organization
Solo LTRs
Enhancers
Online Access:http://link.springer.com/article/10.1186/s13059-018-1598-7

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http://link.springer.com/article/10.1186/s13059-018-1598-7

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