Piphillin predicts metagenomic composition and dynamics from DADA2-corrected 16S rDNA sequences

Piphillin predicts metagenomic composition and dynamics from DADA2-corrected 16S rDNA sequences

Abstract Background Shotgun metagenomic sequencing reveals the potential in microbial communities. However, lower-cost 16S ribosomal RNA (rRNA) gene sequencing provides taxonomic, not functional, observations. To remedy this, we previously introduced Piphillin, a software package that predicts funct...

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Bibliographic Details
Main Authors: Nicole R. Narayan, Thomas Weinmaier, Emilio J. Laserna-Mendieta, Marcus J. Claesson, Fergus Shanahan, Karim Dabbagh, Shoko Iwai, Todd Z. DeSantis
Format: Article
Language:English
Published: BMC 2020-01-01
Series:BMC Genomics
Subjects:
Metagenomics
Phylogenetic analysis
Sequence alignment
Shotgun sequencing
Genomic databases
Online Access:https://doi.org/10.1186/s12864-019-6427-1

Internet

https://doi.org/10.1186/s12864-019-6427-1

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