DiTing: A Pipeline to Infer and Compare Biogeochemical Pathways From Metagenomic and Metatranscriptomic Data

DiTing: A Pipeline to Infer and Compare Biogeochemical Pathways From Metagenomic and Metatranscriptomic Data

Metagenomics and metatranscriptomics are powerful methods to uncover key micro-organisms and processes driving biogeochemical cycling in natural ecosystems. Databases dedicated to depicting biogeochemical pathways (for example, metabolism of dimethylsulfoniopropionate (DMSP), which is an abundant or...

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Bibliographic Details
Main Authors: Chun-Xu Xue, Heyu Lin, Xiao-Yu Zhu, Jiwen Liu, Yunhui Zhang, Gary Rowley, Jonathan D. Todd, Meng Li, Xiao-Hua Zhang
Format: Article
Language:English
Published: Frontiers Media S.A. 2021-08-01
Series:Frontiers in Microbiology
Subjects:
biogeochemical cycle
metagenomics
pipleline
software
DiTing
metatranscriptomics
Online Access:https://www.frontiersin.org/articles/10.3389/fmicb.2021.698286/full

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https://www.frontiersin.org/articles/10.3389/fmicb.2021.698286/full

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