On Comparison of SimTandem with State-of-the-Art Peptide Identification Tools, Efficiency of Precursor Mass Filter and Dealing with Variable Modifications

The similarity search in theoretical mass spectra generated from protein sequence databases is a widely accepted approach for identification of peptides from query mass spectra produced by shotgun proteomics. Growing protein sequence databases and noisy query spectra demand database indexing techniq...

Full description

Bibliographic Details
Main Authors: Novák Jiří, Hoksza David, Skopal Tomáš, Kohlbacher Oliver
Format: Article
Language:English
Published: De Gruyter 2013-12-01
Series:Journal of Integrative Bioinformatics
Online Access:https://doi.org/10.1515/jib-2013-228