A Computational Model of Quantitative Chromatin Immunoprecipitation (ChIP) Analysis

A Computational Model of Quantitative Chromatin Immunoprecipitation (ChIP) Analysis

Show other versions (1)

Chromatin immunoprecipitation (ChIP) analysis is widely used to identify the locations in genomes occupied by transcription factors (TFs). The approach involves chemical cross-linking of DNA with associated proteins, fragmentation of chromatin by sonication or enzymatic digestion, immunoprecipitatio...

Full description

Bibliographic Details
Main Authors:	Jingping Xie, Philip S. Crooke, Brett A. McKinney, Joel Soltman, Stephen J. Brandt M.D.
Format:	Article
Language:	English
Published:	SAGE Publishing 2008-01-01
Series:	Cancer Informatics
Online Access:	https://doi.org/10.4137/CIN.S295

Similar Items

A Computational Model of Quantitative Chromatin Immunoprecipitation (ChIP) Analysis
by: Stephen J. Brandt, et al.
Published: (2008-01-01)

Protocol: methodology for chromatin immunoprecipitation (ChIP) in <it>Chlamydomonas reinhardtii</it>
by: Strenkert Daniela, et al.
Published: (2011-11-01)

Chromatin Immunoprecipitation and Sequencing (ChIP-seq) Optimized for Application in Caenorhabditis elegans
by: Kavšek, A., et al.
Published: (2021)

Protocol: fine-tuning of a Chromatin Immunoprecipitation (ChIP) protocol in tomato
by: Iusem Norberto D, et al.
Published: (2010-04-01)

A ChIP on the shoulder? Chromatin immunoprecipitation and validation strategies for ChIP antibodies [version 1; referees: 2 approved]
by: Fiona C. Wardle, et al.
Published: (2015-07-01)

A native chromatin immunoprecipitation (ChIP) protocol for studying histone modifications in strawberry fruits
by: Xiaorong Huang, et al.
Published: (2020-02-01)

Reverse Chromatin Immunoprecipitation (R-ChIP) enables investigation of the upstream regulators of plant genes
by: Xuejing Wen, et al.
Published: (2020-12-01)

Protocol: Chromatin immunoprecipitation (ChIP) methodology to investigate histone modifications in two model diatom species
by: Lin Xin, et al.
Published: (2012-12-01)

Chromatin immunoprecipitation (ChIP) method for non-model fruit flies (Diptera: Tephritidae) and evidence of histone modifications.
by: Kumaran Nagalingam, et al.
Published: (2018-01-01)

2C-ChIP: measuring chromatin immunoprecipitation signal from defined genomic regions with deep sequencing
by: Xue Qing David Wang, et al.
Published: (2019-02-01)

Purification of nanogram-range immunoprecipitated DNA in ChIP-seq application
by: Jian Zhong, et al.
Published: (2017-12-01)

Chromatin immunoprecipitation (ChIP): revisiting the efficacy of sample preparation, sonication, quantification of sheared DNA, and analysis via PCR.
by: Pamela D Schoppee Bortz, et al.
Published: (2011-01-01)

Construction of a database for transcription factor binding sites identified by plant chromatin immunoprecipitation sequencing (ChIP-seq) experiments
by: Yu-ChengHung, et al.
Published: (2018)

Chromatin immunoprecipitation: optimization, quantitative analysis and data normalization
by: Peterhansel Christoph, et al.
Published: (2007-09-01)

An optimized protocol for isolating primary epithelial cell chromatin for ChIP.
by: James A Browne, et al.
Published: (2014-01-01)

Impact of artefact removal on ChIP quality metrics in ChIP-seq and ChIP-exo data.
by: Thomas Samuel Carroll, et al.
Published: (2014-04-01)

Protocol for fractionation-assisted native ChIP (fanChIP) to capture protein-protein/DNA interactions on chromatin
by: Ryo Miyamoto, et al.
Published: (2021-06-01)

SpikChIP: A novel computational methodology to compare multiple ChIP-seq using spike-in chromatin
by: Aranda, S., et al.
Published: (2021)

ChIPpeakAnno: a Bioconductor package to annotate ChIP-seq and ChIP-chip data
by: Pagès Hervé, et al.
Published: (2010-05-01)

ChIP-chip versus ChIP-seq: Lessons for experimental design and data analysis
by: Karchenko Peter V, et al.
Published: (2011-02-01)

Enhanced and controlled chromatin extraction from FFPE tissues and the application to ChIP-seq
by: Jian Zhong, et al.
Published: (2019-03-01)

Profiling chromatin regulatory landscape: insights into the development of ChIP-seq and ATAC-seq
by: Shaoqian Ma, et al.
Published: (2020-10-01)

"Visualisation des "Arbres de Noël" de Mïller par Immunoprécipitation de Chromatine (ChIP) et mise en évidence d'un mécanisme de Surveillance Nucléolaire des ARN ribosomiques"
by: Ruidant, Sabine MM
Published: (2008)

Visualisation des Arbres de Noël de Miller par immunoprécipitation de chromatine (ChIP) et mise en évidence d'un mécanisme de surveillance nucléolaire des ARN ribosomiques
by: Ruidant, Sabine
Published: (2008)

Rank-statistics based enrichment-site prediction algorithm developed for chromatin immunoprecipitation on chip experiments
by: Sekinger Edward, et al.
Published: (2006-10-01)

Tagging of MADS domain proteins for chromatin immunoprecipitation
by: van Zuijlen Lisette GC, et al.
Published: (2007-09-01)

Sequence analysis of chromatin immunoprecipitation data for factors
by: MacIsaac, Kenzie Daniel, et al.
Published: (2012)

Impact of genome assembly status on ChIP-Seq and ChIP-PET data mapping
by: Sachs Laurent, et al.
Published: (2009-12-01)

Fish the ChIPs: a pipeline for automated genomic annotation of ChIP-Seq data
by: Minucci Saverio, et al.
Published: (2011-10-01)

Analysis of the mouse embryonic stem cell regulatory networks obtained by ChIP-chip and ChIP-PET
by: Mathur, Divya, et al.
Published: (2010)

Quantitative ChIP-Seq Normalization Reveals Global Modulation of the Epigenome
by: David A. Orlando, et al.
Published: (2014-11-01)

Modeling ChIP sequencing in silico with applications.
by: Zhengdong D Zhang, et al.
Published: (2008-08-01)

Informative sequence-based models for fragment distributions in ChIP-seq, RNA-seq and ChIP-chip data
by: Dyer, Nigel
Published: (2011)

Epigenomic profiling of archived FFPE tissues by enhanced PAT-ChIP (EPAT-ChIP) technology
by: Stefano Amatori, et al.
Published: (2018-11-01)

Direct identification of insulator components by insertional chromatin immunoprecipitation.
by: Toshitsugu Fujita, et al.
Published: (2011-01-01)

Analysis of Developmental Epistasis by Chromatin Immunoprecipitation in Xenopus laevis
by: Mansperger, Katrin
Published: (2007)

Isolation of Specific Genomic Regions and Identification of Their Associated Molecules by Engineered DNA-Binding Molecule-Mediated Chromatin Immunoprecipitation (enChIP) Using the CRISPR System and TAL Proteins
by: Hodaka Fujii, et al.
Published: (2015-09-01)

CAST-ChIP Maps Cell-Type-Specific Chromatin States in the Drosophila Central Nervous System
by: Tamás Schauer, et al.
Published: (2013-10-01)

Chromatin composition is changed by poly(ADP-ribosyl)ation during chromatin immunoprecipitation.
by: Sascha Beneke, et al.
Published: (2012-01-01)

Simplified ChIP-exo assays
by: Matthew J. Rossi, et al.
Published: (2018-07-01)

Cannot write session to /tmp/vufind_sessions/sess_s7kiv914mq9t0olsce3lvblkjo