LD-annot: A Bioinformatics Tool to Automatically Provide Candidate SNPs With Annotations for Genetically Linked Genes

LD-annot: A Bioinformatics Tool to Automatically Provide Candidate SNPs With Annotations for Genetically Linked Genes

A multitude of model and non-model species studies have now taken full advantage of powerful high-throughput genotyping advances such as SNP arrays and genotyping-by-sequencing (GBS) technology to investigate the genetic basis of trait variation. However, due to incomplete genome coverage by these t...

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Bibliographic Details
Main Authors: Julien Prunier, Audrey Lemaçon, Alexandre Bastien, Mohsen Jafarikia, Ilga Porth, Claude Robert, Arnaud Droit
Format: Article
Language:English
Published: Frontiers Media S.A. 2019-11-01
Series:Frontiers in Genetics
Subjects:
linkage disequilibrium
candidate SNP
SNP annotation
bioinformatics tool
variant call format (VCF)
SNP chip analyses
Online Access:https://www.frontiersin.org/article/10.3389/fgene.2019.01192/full

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https://www.frontiersin.org/article/10.3389/fgene.2019.01192/full

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