Utility and First Clinical Application of Screening Embryos for Polygenic Disease Risk Reduction

For over 2 decades preimplantation genetic testing (PGT) has been in clinical use to reduce the risk of miscarriage and genetic disease in patients with advanced maternal age and risk of transmitting disease. Recently developed methods of genome-wide genotyping and machine learning algorithms now of...

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Main Authors: Nathan R. Treff, Jennifer Eccles, Lou Lello, Elan Bechor, Jeffrey Hsu, Kathryn Plunkett, Raymond Zimmerman, Bhavini Rana, Artem Samoilenko, Steven Hsu, Laurent C. A. M. Tellier
Format: Article
Language:English
Published: Frontiers Media S.A. 2019-12-01
Series:Frontiers in Endocrinology
Subjects:
Online Access:https://www.frontiersin.org/article/10.3389/fendo.2019.00845/full
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spelling doaj-0524aeb888ec4c48be3956f2a02fd2962020-11-25T02:12:59ZengFrontiers Media S.A.Frontiers in Endocrinology1664-23922019-12-011010.3389/fendo.2019.00845485071Utility and First Clinical Application of Screening Embryos for Polygenic Disease Risk ReductionNathan R. Treff0Nathan R. Treff1Jennifer Eccles2Jennifer Eccles3Lou Lello4Lou Lello5Elan Bechor6Jeffrey Hsu7Kathryn Plunkett8Kathryn Plunkett9Raymond Zimmerman10Raymond Zimmerman11Bhavini Rana12Bhavini Rana13Artem Samoilenko14Steven Hsu15Laurent C. A. M. Tellier16Laurent C. A. M. Tellier17Laurent C. A. M. Tellier18Genomic Prediction Inc., North Brunswick, NJ, United StatesGenomic Prediction Clinical Laboratory, North Brunswick, NJ, United StatesGenomic Prediction Inc., North Brunswick, NJ, United StatesGenomic Prediction Clinical Laboratory, North Brunswick, NJ, United StatesGenomic Prediction Inc., North Brunswick, NJ, United StatesDepartment of Physics and Astronomy, Michigan State University, East Lansing, MI, United StatesGenomic Prediction Inc., North Brunswick, NJ, United StatesGenomic Prediction Inc., North Brunswick, NJ, United StatesGenomic Prediction Inc., North Brunswick, NJ, United StatesGenomic Prediction Clinical Laboratory, North Brunswick, NJ, United StatesGenomic Prediction Inc., North Brunswick, NJ, United StatesGenomic Prediction Clinical Laboratory, North Brunswick, NJ, United StatesGenomic Prediction Inc., North Brunswick, NJ, United StatesGenomic Prediction Clinical Laboratory, North Brunswick, NJ, United StatesGenomic Prediction Inc., North Brunswick, NJ, United StatesDepartment of Physics and Astronomy, Michigan State University, East Lansing, MI, United StatesGenomic Prediction Inc., North Brunswick, NJ, United StatesGenomic Prediction Clinical Laboratory, North Brunswick, NJ, United StatesDepartment of Physics and Astronomy, Michigan State University, East Lansing, MI, United StatesFor over 2 decades preimplantation genetic testing (PGT) has been in clinical use to reduce the risk of miscarriage and genetic disease in patients with advanced maternal age and risk of transmitting disease. Recently developed methods of genome-wide genotyping and machine learning algorithms now offer the ability to genotype embryos for polygenic disease risk with accuracy equivalent to adults. In addition, contemporary studies on adults indicate the ability to predict polygenic disorders with risk equivalent to monogenic disorders. Existing biobanks provide opportunities to model the clinical utility of polygenic disease risk reduction among sibling adults. Here, we provide a mathematical model for the use of embryo screening to reduce the risk of type 1 diabetes. Results indicate a 45–72% reduced risk with blinded genetic selection of one sibling. The first clinical case of polygenic risk scoring in human preimplantation embryos from patients with a family history of complex disease is reported. In addition to these data, several common and accepted practices place PGT for polygenic disease risk in the applicable context of contemporary reproductive medicine. In addition, prediction of risk for PCOS, endometriosis, and aneuploidy are of particular interest and relevance to patients with infertility and represent an important focus of future research on polygenic risk scoring in embryos.https://www.frontiersin.org/article/10.3389/fendo.2019.00845/fullpolygenic risk scorepreimplantation genetic testingadvanced maternal ageaneuploidytype 1 diabetes
collection DOAJ
language English
format Article
sources DOAJ
author Nathan R. Treff
Nathan R. Treff
Jennifer Eccles
Jennifer Eccles
Lou Lello
Lou Lello
Elan Bechor
Jeffrey Hsu
Kathryn Plunkett
Kathryn Plunkett
Raymond Zimmerman
Raymond Zimmerman
Bhavini Rana
Bhavini Rana
Artem Samoilenko
Steven Hsu
Laurent C. A. M. Tellier
Laurent C. A. M. Tellier
Laurent C. A. M. Tellier
spellingShingle Nathan R. Treff
Nathan R. Treff
Jennifer Eccles
Jennifer Eccles
Lou Lello
Lou Lello
Elan Bechor
Jeffrey Hsu
Kathryn Plunkett
Kathryn Plunkett
Raymond Zimmerman
Raymond Zimmerman
Bhavini Rana
Bhavini Rana
Artem Samoilenko
Steven Hsu
Laurent C. A. M. Tellier
Laurent C. A. M. Tellier
Laurent C. A. M. Tellier
Utility and First Clinical Application of Screening Embryos for Polygenic Disease Risk Reduction
Frontiers in Endocrinology
polygenic risk score
preimplantation genetic testing
advanced maternal age
aneuploidy
type 1 diabetes
author_facet Nathan R. Treff
Nathan R. Treff
Jennifer Eccles
Jennifer Eccles
Lou Lello
Lou Lello
Elan Bechor
Jeffrey Hsu
Kathryn Plunkett
Kathryn Plunkett
Raymond Zimmerman
Raymond Zimmerman
Bhavini Rana
Bhavini Rana
Artem Samoilenko
Steven Hsu
Laurent C. A. M. Tellier
Laurent C. A. M. Tellier
Laurent C. A. M. Tellier
author_sort Nathan R. Treff
title Utility and First Clinical Application of Screening Embryos for Polygenic Disease Risk Reduction
title_short Utility and First Clinical Application of Screening Embryos for Polygenic Disease Risk Reduction
title_full Utility and First Clinical Application of Screening Embryos for Polygenic Disease Risk Reduction
title_fullStr Utility and First Clinical Application of Screening Embryos for Polygenic Disease Risk Reduction
title_full_unstemmed Utility and First Clinical Application of Screening Embryos for Polygenic Disease Risk Reduction
title_sort utility and first clinical application of screening embryos for polygenic disease risk reduction
publisher Frontiers Media S.A.
series Frontiers in Endocrinology
issn 1664-2392
publishDate 2019-12-01
description For over 2 decades preimplantation genetic testing (PGT) has been in clinical use to reduce the risk of miscarriage and genetic disease in patients with advanced maternal age and risk of transmitting disease. Recently developed methods of genome-wide genotyping and machine learning algorithms now offer the ability to genotype embryos for polygenic disease risk with accuracy equivalent to adults. In addition, contemporary studies on adults indicate the ability to predict polygenic disorders with risk equivalent to monogenic disorders. Existing biobanks provide opportunities to model the clinical utility of polygenic disease risk reduction among sibling adults. Here, we provide a mathematical model for the use of embryo screening to reduce the risk of type 1 diabetes. Results indicate a 45–72% reduced risk with blinded genetic selection of one sibling. The first clinical case of polygenic risk scoring in human preimplantation embryos from patients with a family history of complex disease is reported. In addition to these data, several common and accepted practices place PGT for polygenic disease risk in the applicable context of contemporary reproductive medicine. In addition, prediction of risk for PCOS, endometriosis, and aneuploidy are of particular interest and relevance to patients with infertility and represent an important focus of future research on polygenic risk scoring in embryos.
topic polygenic risk score
preimplantation genetic testing
advanced maternal age
aneuploidy
type 1 diabetes
url https://www.frontiersin.org/article/10.3389/fendo.2019.00845/full
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