MicroPro: using metagenomic unmapped reads to provide insights into human microbiota and disease associations

Abstract We develop a metagenomic data analysis pipeline, MicroPro, that takes into account all reads from known and unknown microbial organisms and associates viruses with complex diseases. We utilize MicroPro to analyze four metagenomic datasets relating to colorectal cancer, type 2 diabetes, and...

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Bibliographic Details
Main Authors: Zifan Zhu, Jie Ren, Sonia Michail, Fengzhu Sun
Format: Article
Language:English
Published: BMC 2019-08-01
Series:Genome Biology
Subjects:
Online Access:http://link.springer.com/article/10.1186/s13059-019-1773-5