Impact of concurrency on the performance of a whole exome sequencing pipeline

Impact of concurrency on the performance of a whole exome sequencing pipeline

Abstract Background Current high-throughput technologies—i.e. whole genome sequencing, RNA-Seq, ChIP-Seq, etc.—generate huge amounts of data and their usage gets more widespread with each passing year. Complex analysis pipelines involving several computationally-intensive steps have to be applied on...

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Bibliographic Details
Main Authors: Daniele Dall’Olio, Nico Curti, Eugenio Fonzi, Claudia Sala, Daniel Remondini, Gastone Castellani, Enrico Giampieri
Format: Article
Language:English
Published: BMC 2021-02-01
Series:BMC Bioinformatics
Subjects:
Concurrency
Parallel computing
Bioinformatics
Analysis pipeline
Scalability
Efficiency
Online Access:https://doi.org/10.1186/s12859-020-03780-3

Internet

https://doi.org/10.1186/s12859-020-03780-3

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