L1pred: a sequence-based prediction tool for catalytic residues in enzymes with the L1-logreg classifier.

by Yongchao Dou, Jun Wang, Jialiang Yang, Chi Zhang
Published 2012-01-01

Differential Expression Analysis in RNA-Seq by a Naive Bayes Classifier with Local Normalization

by Yongchao Dou, Xiaomei Guo, Lingling Yuan, David R. Holding, Chi Zhang
Published 2015-01-01

Synergistic and independent actions of multiple terminal nucleotidyl transferases in the 3' tailing of small RNAs in Arabidopsis.

by Xiaoyan Wang, Shuxin Zhang, Yongchao Dou, Chi Zhang, Xuemei Chen, Bin Yu, Guodong Ren
Published 2015-04-01

caAtlas: An immunopeptidome atlas of human cancer

by Xinpei Yi, Yuxing Liao, Bo Wen, Kai Li, Yongchao Dou, Sara R. Savage, Bing Zhang
Published 2021-10-01

Genetic and molecular characterization of submergence response identifies Subtol6 as a major submergence tolerance locus in maize.

by Malachy T Campbell, Christopher A Proctor, Yongchao Dou, Aaron J Schmitz, Piyaporn Phansak, Greg R Kruger, Chi Zhang, Harkamal Walia
Published 2015-01-01

KRAS-dependent sorting of miRNA to exosomes

by Diana J Cha, Jeffrey L Franklin, Yongchao Dou, Qi Liu, James N Higginbotham, Michelle Demory Beckler, Alissa M Weaver, Kasey Vickers, Nirpesh Prasad, Shawn Levy, Bing Zhang, Robert J Coffey, James G Patton
Published 2015-07-01

Diverse Long RNAs Are Differentially Sorted into Extracellular Vesicles Secreted by Colorectal Cancer Cells

by Scott A. Hinger, Diana J. Cha, Jeffrey L. Franklin, James N. Higginbotham, Yongchao Dou, Jie Ping, Lihua Shu, Nripesh Prasad, Shawn Levy, Bing Zhang, Qi Liu, Alissa M. Weaver, Robert J. Coffey, James G. Patton
Published 2018-10-01

Microscaled proteogenomic methods for precision oncology

by Shankha Satpathy, Eric J. Jaehnig, Karsten Krug, Beom-Jun Kim, Alexander B. Saltzman, Doug W. Chan, Kimberly R. Holloway, Meenakshi Anurag, Chen Huang, Purba Singh, Ari Gao, Noel Namai, Yongchao Dou, Bo Wen, Suhas V. Vasaikar, David Mutch, Mark A. Watson, Cynthia Ma, Foluso O. Ademuyiwa, Mothaffar F. Rimawi, Rachel Schiff, Jeremy Hoog, Samuel Jacobs, Anna Malovannaya, Terry Hyslop, Karl R. Clauser, D. R. Mani, Charles M. Perou, George Miles, Bing Zhang, Michael A. Gillette, Steven A. Carr, Matthew J. Ellis
Published 2020-01-01