bacterial strain nonhuman Article Carbon utilization enzymes DNA base composition Escherichia coli Escherichia coli Proteins Escherichia coli protein Genome, Bacterial Grapevine exudates Letter MCR-1 protein, E coli Organic acids Pseudomonas mendocina RNA 16S RNA 23S RNA 5S Single molecule real-time (SMRT) sequencing TP Chemical technology Vineyard soil Vitis Whole Genome Sequencing aconitate hydratase aminoglycoside antibiotic agent antibiotic resistance bacterial gene bacterial genome bacterial growth bacterium identification bioinformatics