Phylogenetic and Demographic Characterization of Directed HIV-1 Transmission Using Deep Sequences from High-Risk and General Population Cohorts/Groups in Uganda

by Nicholas Bbosa, Deogratius Ssemwanga, Alfred Ssekagiri, Xiaoyue Xi, Yunia Mayanja, Ubaldo Bahemuka, Janet Seeley, Deenan Pillay, Lucie Abeler-Dörner, Tanya Golubchik, Christophe Fraser, Pontiano Kaleebu, Oliver Ratmann, on behalf of the MRC/UVRI & LSHTM Uganda Research Unit and The PANGEA Consortium
Published 2020-03-01

Estimating the number of undetected COVID-19 cases among travellers from mainland China [version 2; peer review: 1 approved, 2 approved with reservations]

by Sangeeta Bhatia, Natsuko Imai, Gina Cuomo-Dannenburg, Marc Baguelin, Adhiratha Boonyasiri, Anne Cori, Zulma Cucunubá, Ilaria Dorigatti, Rich FitzJohn, Han Fu, Katy Gaythorpe, Azra Ghani, Arran Hamlet, Wes Hinsley, Daniel Laydon, Gemma Nedjati-Gilani, Lucy Okell, Steven Riley, Hayley Thompson, Sabine van Elsland, Erik Volz, Haowei Wang, Yuanrong Wang, Charles Whittaker, Xiaoyue Xi, Christl A. Donnelly, Neil M. Ferguson
Published 2021-09-01

Evidence of initial success for China exiting COVID-19 social distancing policy after achieving containment [version 2; peer review: 2 approved]

by Kylie E. C. Ainslie, Caroline E. Walters, Han Fu, Sangeeta Bhatia, Haowei Wang, Xiaoyue Xi, Marc Baguelin, Samir Bhatt, Adhiratha Boonyasiri, Olivia Boyd, Lorenzo Cattarino, Constanze Ciavarella, Zulma Cucunuba, Gina Cuomo-Dannenburg, Amy Dighe, Ilaria Dorigatti, Sabine L van Elsland, Rich FitzJohn, Katy Gaythorpe, Azra C Ghani, Will Green, Arran Hamlet, Wes Hinsley, Natsuko Imai, David Jorgensen, Edward Knock, Daniel Laydon, Gemma Nedjati-Gilani, Lucy C Okell, Igor Siveroni, Hayley A Thompson, H. Juliette T. Unwin, Robert Verity, Michaela Vollmer, Patrick G T Walker, Yuanrong Wang, Oliver J Watson, Charles Whittaker, Peter Winskill, Christl A Donnelly, Neil M Ferguson, Steven Riley
Published 2020-10-01

Evidence of initial success for China exiting COVID-19 social distancing policy after achieving containment [version 1; peer review: 2 approved]

by Kylie E C Ainslie, Caroline E. Walters, Han Fu, Sangeeta Bhatia, Haowei Wang, Xiaoyue Xi, Marc Baguelin, Samir Bhatt, Adhiratha Boonyasiri, Olivia Boyd, Lorenzo Cattarino, Constanze Ciavarella, Zulma Cucunuba, Gina Cuomo-Dannenburg, Amy Dighe, Ilaria Dorigatti, Sabine L van Elsland, Rich FitzJohn, Katy Gaythorpe, Azra C Ghani, Will Green, Arran Hamlet, Wes Hinsley, Natsuko Imai, David Jorgensen, Edward Knock, Daniel Laydon, Gemma Nedjati-Gilani, Lucy C Okell, Igor Siveroni, Hayley A Thompson, H Juliette T Unwin, Robert Verity, Michaela Vollmer, Patrick G T Walker, Yuanrong Wang, Oliver J Watson, Charles Whittaker, Peter Winskill, Christl A Donnelly, Neil M Ferguson, Steven Riley
Published 2020-04-01

State-level tracking of COVID-19 in the United States

by H. Juliette T. Unwin, Swapnil Mishra, Valerie C. Bradley, Axel Gandy, Thomas A. Mellan, Helen Coupland, Jonathan Ish-Horowicz, Michaela A. C. Vollmer, Charles Whittaker, Sarah L. Filippi, Xiaoyue Xi, Mélodie Monod, Oliver Ratmann, Michael Hutchinson, Fabian Valka, Harrison Zhu, Iwona Hawryluk, Philip Milton, Kylie E. C. Ainslie, Marc Baguelin, Adhiratha Boonyasiri, Nick F. Brazeau, Lorenzo Cattarino, Zulma Cucunuba, Gina Cuomo-Dannenburg, Ilaria Dorigatti, Oliver D. Eales, Jeffrey W. Eaton, Sabine L. van Elsland, Richard G. FitzJohn, Katy A. M. Gaythorpe, William Green, Wes Hinsley, Benjamin Jeffrey, Edward Knock, Daniel J. Laydon, John Lees, Gemma Nedjati-Gilani, Pierre Nouvellet, Lucy Okell, Kris V. Parag, Igor Siveroni, Hayley A. Thompson, Patrick Walker, Caroline E. Walters, Oliver J. Watson, Lilith K. Whittles, Azra C. Ghani, Neil M. Ferguson, Steven Riley, Christl A. Donnelly, Samir Bhatt, Seth Flaxman
Published 2020-12-01

Reduction in mobility and COVID-19 transmission

by Pierre Nouvellet, Sangeeta Bhatia, Anne Cori, Kylie E. C. Ainslie, Marc Baguelin, Samir Bhatt, Adhiratha Boonyasiri, Nicholas F. Brazeau, Lorenzo Cattarino, Laura V. Cooper, Helen Coupland, Zulma M. Cucunuba, Gina Cuomo-Dannenburg, Amy Dighe, Bimandra A. Djaafara, Ilaria Dorigatti, Oliver D. Eales, Sabine L. van Elsland, Fabricia F. Nascimento, Richard G. FitzJohn, Katy A. M. Gaythorpe, Lily Geidelberg, William D. Green, Arran Hamlet, Katharina Hauck, Wes Hinsley, Natsuko Imai, Benjamin Jeffrey, Edward Knock, Daniel J. Laydon, John A. Lees, Tara Mangal, Thomas A. Mellan, Gemma Nedjati-Gilani, Kris V. Parag, Margarita Pons-Salort, Manon Ragonnet-Cronin, Steven Riley, H. Juliette T. Unwin, Robert Verity, Michaela A. C. Vollmer, Erik Volz, Patrick G. T. Walker, Caroline E. Walters, Haowei Wang, Oliver J. Watson, Charles Whittaker, Lilith K. Whittles, Xiaoyue Xi, Neil M. Ferguson, Christl A. Donnelly
Published 2021-02-01

Database of epidemic trends and control measures during the first wave of COVID-19 in mainland China

by Han Fu, Haowei Wang, Xiaoyue Xi, Adhiratha Boonyasiri, Yuanrong Wang, Wes Hinsley, Keith J. Fraser, Ruth McCabe, Daniela Olivera Mesa, Janetta Skarp, Alice Ledda, Tamsin Dewé, Amy Dighe, Peter Winskill, Sabine L. van Elsland, Kylie E.C. Ainslie, Marc Baguelin, Samir Bhatt, Olivia Boyd, Nicholas F. Brazeau, Lorenzo Cattarino, Giovanni Charles, Helen Coupland, Zulma M. Cucunuba, Gina Cuomo-Dannenburg, Christl A. Donnelly, Ilaria Dorigatti, Oliver D. Eales, Richard G. FitzJohn, Seth Flaxman, Katy A.M. Gaythorpe, Azra C. Ghani, William D. Green, Arran Hamlet, Katharina Hauck, David J. Haw, Benjamin Jeffrey, Daniel J. Laydon, John A. Lees, Thomas Mellan, Swapnil Mishra, Gemma Nedjati-Gilani, Pierre Nouvellet, Lucy Okell, Kris V. Parag, Manon Ragonnet-Cronin, Steven Riley, Nora Schmit, Hayley A. Thompson, H.Juliette T. Unwin, Robert Verity, Michaela A.C. Vollmer, Erik Volz, Patrick G.T. Walker, Caroline E. Walters, Oliver J. Watson, Charles Whittaker, Lilith K. Whittles, Natsuko Imai, Sangeeta Bhatia, Neil M. Ferguson
Published 2021-01-01

Potential impact of the COVID-19 pandemic on HIV, tuberculosis, and malaria in low-income and middle-income countries: a modelling study

by Alexandra B Hogan, PhD, Britta L Jewell, PhD, Ellie Sherrard-Smith, PhD, Juan F Vesga, PhD, Oliver J Watson, PhD, Charles Whittaker, MSc, Arran Hamlet, PhD, Jennifer A Smith, DPhil, Peter Winskill, PhD, Robert Verity, PhD, Marc Baguelin, PhD, John A Lees, PhD, Lilith K Whittles, PhD, Kylie E C Ainslie, PhD, Samir Bhatt, DPhil, Adhiratha Boonyasiri, MD, Nicholas F Brazeau, PhD, Lorenzo Cattarino, PhD, Laura V Cooper, MPhil, Helen Coupland, MRes, Gina Cuomo-Dannenburg, MMath, Amy Dighe, MRes, Bimandra A Djaafara, MRes, Christl A Donnelly, ProfScD, Jeff W Eaton, PhD, Sabine L van Elsland, PhD, Richard G FitzJohn, PhD, Han Fu, PhD, Katy A M Gaythorpe, PhD, William Green, MRes, David J Haw, PhD, Sarah Hayes, MSc, Wes Hinsley, PhD, Natsuko Imai, PhD, Daniel J Laydon, PhD, Tara D Mangal, PhD, Thomas A Mellan, PhD, Swapnil Mishra, PhD, Gemma Nedjati-Gilani, PhD, Kris V Parag, PhD, Hayley A Thompson, MPH, H Juliette T Unwin, PhD, Michaela A C Vollmer, PhD, Caroline E Walters, PhD, Haowei Wang, MSc, Yuanrong Wang, Xiaoyue Xi, MSc, Neil M Ferguson, ProfDPhil, Lucy C Okell, PhD, Thomas S Churcher, PhD, Nimalan Arinaminpathy, DPhil, Azra C Ghani, ProfPhD, Patrick G T Walker, PhD, Timothy B Hallett, ProfPhD
Published 2020-09-01