Elucidating the Beta-Diversity of the Microbiome: from Global Alignment to Local Alignment

by Xiaoquan Su
Published 2021-08-01

Method development for cross-study microbiome data mining: Challenges and opportunities

by Xiaoquan Su, Gongchao Jing, Yufeng Zhang, Shunyao Wu
Published 2020-01-01

Meta-QC-Chain: Comprehensive and Fast Quality Control Method for Metagenomic Data

by Qian Zhou, Xiaoquan Su, Gongchao Jing, Kang Ning
Published 2014-02-01

MetaSee: an interactive and extendable visualization toolbox for metagenomic sample analysis and comparison.

by Baoxing Song, Xiaoquan Su, Jian Xu, Kang Ning
Published 2012-01-01

MetaBoot: a machine learning framework of taxonomical biomarker discovery for different microbial communities based on metagenomic data

by Xiaojun Wang, Xiaoquan Su, Xinping Cui, Kang Ning
Published 2015-07-01

QSpec: online control and data analysis system for single-cell Raman spectroscopy

by Lihui Ren, Xiaoquan Su, Yun Wang, Jian Xu, Kang Ning
Published 2014-06-01

Parallel-META 2.0: enhanced metagenomic data analysis with functional annotation, high performance computing and advanced visualization.

by Xiaoquan Su, Weihua Pan, Baoxing Song, Jian Xu, Kang Ning
Published 2014-01-01

QC-Chain: fast and holistic quality control method for next-generation sequencing data.

by Qian Zhou, Xiaoquan Su, Anhui Wang, Jian Xu, Kang Ning
Published 2013-01-01

RNA-QC-chain: comprehensive and fast quality control for RNA-Seq data

by Qian Zhou, Xiaoquan Su, Gongchao Jing, Songlin Chen, Kang Ning
Published 2018-02-01

Meta-Apo improves accuracy of 16S-amplicon-based prediction of microbiome function

by Gongchao Jing, Yufeng Zhang, Wenzhi Cui, Lu Liu, Jian Xu, Xiaoquan Su
Published 2021-01-01

Towards multi-label classification: Next step of machine learning for microbiome research

by Shunyao Wu, Yuzhu Chen, Zhiruo Li, Jian Li, Fengyang Zhao, Xiaoquan Su
Published 2021-01-01

Predicting Selective RNA Processing and Stabilization Operons in Clostridium spp.

by Yogendra Bhaskar, Yogendra Bhaskar, Xiaoquan Su, Chenggang Xu, Jian Xu, Jian Xu
Published 2021-06-01

A Scale-Free, Fully Connected Global Transition Network Underlies Known Microbiome Diversity

by Gongchao Jing, Yufeng Zhang, Lu Liu, Zengbin Wang, Zheng Sun, Rob Knight, Xiaoquan Su, Jian Xu
Published 2021-08-01

Feed-additive probiotics accelerate yet antibiotics delay intestinal microbiota maturation in broiler chicken

by Pengfei Gao, Chen Ma, Zheng Sun, Lifeng Wang, Shi Huang, Xiaoquan Su, Jian Xu, Heping Zhang
Published 2017-08-01

Emerging Trends for Microbiome Analysis: From Single-Cell Functional Imaging to Microbiome Big Data

by Jian Xu, Bo Ma, Xiaoquan Su, Shi Huang, Xin Xu, Xuedong Zhou, Wei E. Huang, Rob Knight
Published 2017-02-01

DNA Extraction Protocol for Biological Ingredient Analysis of Liuwei Dihuang Wan

by Xinwei Cheng, Xiaohua Chen, Xiaoquan Su, Huanxin Zhao, Maozhen Han, Cunpei Bo, Jian Xu, Hong Bai, Kang Ning
Published 2014-06-01

Cow-to-mouse fecal transplantations suggest intestinal microbiome as one cause of mastitis

by Chen Ma, Zheng Sun, Benhua Zeng, Shi Huang, Jie Zhao, Yong Zhang, Xiaoquan Su, Jian Xu, Hong Wei, Heping Zhang
Published 2018-11-01

Reply to Sun et al., “Identifying Composition Novelty in Microbiome Studies: Improvement of Prediction Accuracy”

by Xiaoquan Su, Gongchao Jing, Daniel McDonald, Honglei Wang, Zengbin Wang, Antonio Gonzalez, Zheng Sun, Shi Huang, Jose Navas, Rob Knight, Jian Xu
Published 2019-08-01

Identifying and Predicting Novelty in Microbiome Studies

by Xiaoquan Su, Gongchao Jing, Daniel McDonald, Honglei Wang, Zengbin Wang, Antonio Gonzalez, Zheng Sun, Shi Huang, Jose Navas, Rob Knight, Jian Xu
Published 2018-11-01

Microbiome Search Engine 2: a Platform for Taxonomic and Functional Search of Global Microbiomes on the Whole-Microbiome Level

by Gongchao Jing, Lu Liu, Zengbin Wang, Yufeng Zhang, Li Qian, Chunxiao Gao, Meng Zhang, Min Li, Zhenkun Zhang, Xiaohan Liu, Jian Xu, Xiaoquan Su
Published 2021-02-01