PALMER: improving pathway annotation based on the biomedical literature mining with a constrained latent block model

by Jin Hyun Nam, Daniel Couch, Willian A. da Silveira, Zhenning Yu, Dongjun Chung
Published 2020-10-01

Prominence of IL6, IGF, TLR, and Bioenergetics Pathway Perturbation in Lung Tissues of Scleroderma Patients With Pulmonary Fibrosis

by Ludivine Renaud, Willian A. da Silveira, Naoko Takamura, Gary Hardiman, Gary Hardiman, Carol Feghali-Bostwick
Published 2020-03-01

miRmapper: A Tool for Interpretation of miRNA–mRNA Interaction Networks

by Willian A. da Silveira, Ludivine Renaud, Jonathan Simpson, William B. Glen, Edward. S. Hazard, Dongjun Chung, Gary Hardiman
Published 2018-09-01

The Plasticizer Bisphenol A Perturbs the Hepatic Epigenome: A Systems Level Analysis of the miRNome

by Ludivine Renaud, Willian A. da Silveira, E. Starr Hazard, Jonathan Simpson, Silvia Falcinelli, Dongjun Chung, Oliana Carnevali, Gary Hardiman
Published 2017-10-01

A Human Skin Model Recapitulates Systemic Sclerosis Dermal Fibrosis and Identifies <em>COL22A1</em> as a TGFβ Early Response Gene that Mediates Fibroblast to Myofibroblast Transiti...

by Tomoya Watanabe, DeAnna Baker Frost, Logan Mlakar, Jonathan Heywood, Willian A. da Silveira, Gary Hardiman, Carol Feghali-Bostwick
Published 2019-01-01

GAIL: An interactive webserver for inference and dynamic visualization of gene-gene associations based on gene ontology guided mining of biomedical literature.

by Daniel Couch, Zhenning Yu, Jin Hyun Nam, Carter Allen, Paula S Ramos, Willian A da Silveira, Kelly J Hunt, Edward S Hazard, Gary Hardiman, Andrew Lawson, Dongjun Chung
Published 2019-01-01

Immunological and hematological outcomes following protracted low dose/low dose rate ionizing radiation and simulated microgravity

by Amber M. Paul, Eliah G. Overbey, Willian A. da Silveira, Nathaniel Szewczyk, Nina C. Nishiyama, Michael J. Pecaut, Sulekha Anand, Jonathan M. Galazka, Xiao Wen Mao
Published 2021-06-01

Mice Exposed to Combined Chronic Low-Dose Irradiation and Modeled Microgravity Develop Long-Term Neurological Sequelae

by Eliah G. Overbey, Amber M. Paul, Willian A. da Silveira, Candice G.T. Tahimic, Sigrid S. Reinsch, Nathaniel Szewczyk, Seta Stanbouly, Charles Wang, Jonathan M. Galazka, Xiao Wen Mao
Published 2019-08-01

NASA GeneLab Platform Utilized for Biological Response to Space Radiation in Animal Models

by J. Tyson McDonald, Robert Stainforth, Jack Miller, Thomas Cahill, Willian A. da Silveira, Komal S. Rathi, Gary Hardiman, Deanne Taylor, Sylvain V. Costes, Vinita Chauhan, Robert Meller, Afshin Beheshti
Published 2020-02-01

NASA GeneLab RNA-seq consensus pipeline: Standardized processing of short-read RNA-seq data

by Eliah G. Overbey, Amanda M. Saravia-Butler, Zhe Zhang, Komal S. Rathi, Homer Fogle, Willian A. da Silveira, Richard J. Barker, Joseph J. Bass, Afshin Beheshti, Daniel C. Berrios, Elizabeth A. Blaber, Egle Cekanaviciute, Helio A. Costa, Laurence B. Davin, Kathleen M. Fisch, Samrawit G. Gebre, Matthew Geniza, Rachel Gilbert, Simon Gilroy, Gary Hardiman, Raúl Herranz, Yared H. Kidane, Colin P.S. Kruse, Michael D. Lee, Ted Liefeld, Norman G. Lewis, J. Tyson McDonald, Robert Meller, Tejaswini Mishra, Imara Y. Perera, Shayoni Ray, Sigrid S. Reinsch, Sara Brin Rosenthal, Michael Strong, Nathaniel J. Szewczyk, Candice G.T. Tahimic, Deanne M. Taylor, Joshua P. Vandenbrink, Alicia Villacampa, Silvio Weging, Chris Wolverton, Sarah E. Wyatt, Luis Zea, Sylvain V. Costes, Jonathan M. Galazka
Published 2021-04-01