What Do Neighbors Tell About You: The Local Context of Cis-Regulatory Modules Complicates Prediction of Regulatory Variants

by Dmitry D. Penzar, Dmitry D. Penzar, Dmitry D. Penzar, Arsenii O. Zinkevich, Arsenii O. Zinkevich, Ilya E. Vorontsov, Vasily V. Sitnik, Alexander V. Favorov, Alexander V. Favorov, Vsevolod J. Makeev, Vsevolod J. Makeev, Vsevolod J. Makeev, Ivan V. Kulakovskiy, Ivan V. Kulakovskiy, Ivan V. Kulakovskiy
Published 2019-10-01

Exploring massive, genome scale datasets with the GenometriCorr package.

by Alexander Favorov, Loris Mularoni, Leslie M Cope, Yulia Medvedeva, Andrey A Mironov, Vsevolod J Makeev, Sarah J Wheelan
Published 2012-05-01

Single-Cell Analyses of ESCs Reveal Alternative Pluripotent Cell States and Molecular Mechanisms that Control Self-Renewal

by Dmitri Papatsenko, Henia Darr, Ivan V. Kulakovskiy, Avinash Waghray, Vsevolod J. Makeev, Ben D. MacArthur, Ihor R. Lemischka
Published 2015-08-01

Genome-wide map of human and mouse transcription factor binding sites aggregated from ChIP-Seq data

by Ilya E. Vorontsov, Alla D. Fedorova, Ivan S. Yevshin, Ruslan N. Sharipov, Fedor A. Kolpakov, Vsevolod J. Makeev, Ivan V. Kulakovskiy
Published 2018-10-01

A holistic view of mouse enhancer architectures reveals analogous pleiotropic effects and correlation with human disease

by Siddharth Sethi, Ilya E. Vorontsov, Ivan V. Kulakovskiy, Simon Greenaway, John Williams, Vsevolod J. Makeev, Steve D. M. Brown, Michelle M. Simon, Ann-Marie Mallon
Published 2020-11-01

Defensin-like peptides in wheat analyzed by whole-transcriptome sequencing: a focus on structural diversity and role in induced resistance

by Tatyana I. Odintsova, Marina P. Slezina, Ekaterina A. Istomina, Tatyana V. Korostyleva, Artem S. Kasianov, Alexey S. Kovtun, Vsevolod J. Makeev, Larisa A. Shcherbakova, Alexander M. Kudryavtsev
Published 2019-01-01

Employing toxin-antitoxin genome markers for identification of Bifidobacterium and Lactobacillus strains in human metagenomes

by Ksenia M. Klimina, Artem S. Kasianov, Elena U. Poluektova, Kirill V. Emelyanov, Viktoriya N. Voroshilova, Natalia V. Zakharevich, Anna V. Kudryavtseva, Vsevolod J. Makeev, Valery N. Danilenko
Published 2019-03-01

The single nucleotide variant rs12722489 determines differential estrogen receptor binding and enhancer properties of an IL2RA intronic region.

by Marina A Afanasyeva, Lidia V Putlyaeva, Denis E Demin, Ivan V Kulakovskiy, Ilya E Vorontsov, Marina V Fridman, Vsevolod J Makeev, Dmitry V Kuprash, Anton M Schwartz
Published 2017-01-01

Landscape of allele-specific transcription factor binding in the human genome

by Sergey Abramov, Alexandr Boytsov, Daria Bykova, Dmitry D. Penzar, Ivan Yevshin, Semyon K. Kolmykov, Marina V. Fridman, Alexander V. Favorov, Ilya E. Vorontsov, Eugene Baulin, Fedor Kolpakov, Vsevolod J. Makeev, Ivan V. Kulakovskiy
Published 2021-05-01

Heteroplasmic Variants of Mitochondrial DNA in Atherosclerotic Lesions of Human Aortic Intima

by Igor A. Sobenin, Andrey V. Zhelankin, Zukhra B. Khasanova, Vasily V. Sinyov, Lyudmila V. Medvedeva, Maria O. Sagaidak, Vsevolod J. Makeev, Kira I. Kolmychkova, Anna S. Smirnova, Vasily N. Sukhorukov, Anton Y. Postnov, Andrey V. Grechko, Alexander N. Orekhov
Published 2019-09-01