Editorial: Statistical and Computational Methods for Microbiome Multi-Omics Data

by Himel Mallick, Vanni Bucci, Lingling An, Lingling An, Lingling An
Published 2020-08-01

Social interaction, noise and antibiotic-mediated switches in the intestinal microbiota.

by Vanni Bucci, Serena Bradde, Giulio Biroli, Joao B Xavier
Published 2012-01-01

Biofilm Structure Promotes Coexistence of Phage-Resistant and Phage-Susceptible Bacteria

by Emilia L. Simmons, Matthew C. Bond, Britt Koskella, Knut Drescher, Vanni Bucci, Carey D. Nadell
Published 2020-06-01

Alzheimer’s Disease Microbiome Is Associated with Dysregulation of the Anti-Inflammatory P-Glycoprotein Pathway

by John P. Haran, Shakti K. Bhattarai, Sage E. Foley, Protiva Dutta, Doyle V. Ward, Vanni Bucci, Beth A. McCormick
Published 2019-05-01

The high prevalence of Clostridioides difficile among nursing home elders associates with a dysbiotic microbiome

by John P. Haran, Doyle V. Ward, Shakti K. Bhattarai, Ethan Loew, Protiva Dutta, Amanda Higgins, Beth A. McCormick, Vanni Bucci
Published 2021-01-01

Ecological modeling from time-series inference: insight into dynamics and stability of intestinal microbiota.

by Richard R Stein, Vanni Bucci, Nora C Toussaint, Charlie G Buffie, Gunnar Rätsch, Eric G Pamer, Chris Sander, João B Xavier
Published 2013-01-01

Proanthocyanidin-enriched cranberry extract induces resilient bacterial community dynamics in a gnotobiotic mouse model

by Catherine C. Neto, Benedikt M. Mortzfeld, John R. Turbitt, Shakti K. Bhattarai, Vladimir Yeliseyev, Nicholas DiBenedetto, Lynn Bry, Vanni Bucci
Published 2021-04-01

Antibiotic treatment for Tuberculosis induces a profound dysbiosis of the microbiome that persists long after therapy is completed

by Matthew F. Wipperman, Daniel W. Fitzgerald, Marc Antoine Jean Juste, Ying Taur, Sivaranjani Namasivayam, Alan Sher, James M. Bean, Vanni Bucci, Michael S. Glickman
Published 2017-09-01

Computer-guided design of optimal microbial consortia for immune system modulation

by Richard R Stein, Takeshi Tanoue, Rose L Szabady, Shakti K Bhattarai, Bernat Olle, Jason M Norman, Wataru Suda, Kenshiro Oshima, Masahira Hattori, Georg K Gerber, Chris Sander, Kenya Honda, Vanni Bucci
Published 2018-04-01

Gastrointestinal microbiota composition predicts peripheral inflammatory state during treatment of human tuberculosis

by Matthew F. Wipperman, Shakti K. Bhattarai, Charles Kyriakos Vorkas, Venkata Suhas Maringati, Ying Taur, Laurent Mathurin, Katherine McAulay, Stalz Charles Vilbrun, Daphie Francois, James Bean, Kathleen F. Walsh, Carl Nathan, Daniel W. Fitzgerald, Michael S. Glickman, Vanni Bucci
Published 2021-02-01