The ability of single genes vs full genomes to resolve time and space in outbreak analysis

by Gytis Dudas, Trevor Bedford
Published 2019-12-01

Evidence for adaptive evolution in the receptor-binding domain of seasonal coronaviruses OC43 and 229e

by Kathryn E Kistler, Trevor Bedford
Published 2021-01-01

Modern-day SIV viral diversity generated by extensive recombination and cross-species transmission.

by Sidney M Bell, Trevor Bedford
Published 2017-07-01

Dengue genetic divergence generates within-serotype antigenic variation, but serotypes dominate evolutionary dynamics

by Sidney M Bell, Leah Katzelnick, Trevor Bedford
Published 2019-08-01

Viral phylodynamics.

by Erik M Volz, Katia Koelle, Trevor Bedford
Published 2013-01-01

Early prediction of antigenic transitions for influenza A/H3N2.

by Lauren A Castro, Trevor Bedford, Lauren Ancel Meyers
Published 2020-02-01

Global migration dynamics underlie evolution and persistence of human influenza A (H3N2).

by Trevor Bedford, Sarah Cobey, Peter Beerli, Mercedes Pascual
Published 2010-05-01

The roles of competition and mutation in shaping antigenic and genetic diversity in influenza.

by Daniel Zinder, Trevor Bedford, Sunetra Gupta, Mercedes Pascual
Published 2013-01-01

MERS-CoV spillover at the camel-human interface

by Gytis Dudas, Luiz Max Carvalho, Andrew Rambaut, Trevor Bedford
Published 2018-01-01

Correction: MERS-CoV spillover at the camel-human interface

by Gytis Dudas, Luiz Max Carvalho, Andrew Rambaut, Trevor Bedford
Published 2018-04-01

Estimating Vaccine-Driven Selection in Seasonal Influenza

by Frank T. Wen, Sidney M. Bell, Trevor Bedford, Sarah Cobey
Published 2018-09-01

Comprehensive mapping of adaptation of the avian influenza polymerase protein PB2 to humans

by YQ Shirleen Soh, Louise H Moncla, Rachel Eguia, Trevor Bedford, Jesse D Bloom
Published 2019-04-01

Adaptive evolution and environmental durability jointly structure phylodynamic patterns in avian influenza viruses.

by Benjamin Roche, John M Drake, Justin Brown, David E Stallknecht, Trevor Bedford, Pejman Rohani
Published 2014-08-01

Quantifying and Mitigating the Effect of Preferential Sampling on Phylodynamic Inference.

by Michael D Karcher, Julia A Palacios, Trevor Bedford, Marc A Suchard, Vladimir N Minin
Published 2016-03-01

Spatial guilds in the Serengeti food web revealed by a Bayesian group model.

by Edward B Baskerville, Andy P Dobson, Trevor Bedford, Stefano Allesina, T Michael Anderson, Mercedes Pascual
Published 2011-12-01

Eight challenges in phylodynamic inference

by Simon D.W. Frost, Oliver G. Pybus, Julia R. Gog, Cecile Viboud, Sebastian Bonhoeffer, Trevor Bedford
Published 2015-03-01

Helicobacter pylori diversification during chronic infection within a single host generates sub-populations with distinct phenotypes.

by Laura K Jackson, Barney Potter, Sean Schneider, Matthew Fitzgibbon, Kris Blair, Hajirah Farah, Uma Krishna, Trevor Bedford, Richard M Peek, Nina R Salama
Published 2020-12-01

Repeated introductions and intensive community transmission fueled a mumps virus outbreak in Washington State

by Louise H Moncla, Allison Black, Chase DeBolt, Misty Lang, Nicholas R Graff, Ailyn C Pérez-Osorio, Nicola F Müller, Dirk Haselow, Scott Lindquist, Trevor Bedford
Published 2021-04-01

Integrating influenza antigenic dynamics with molecular evolution

by Trevor Bedford, Marc A Suchard, Philippe Lemey, Gytis Dudas, Victoria Gregory, Alan J Hay, John W McCauley, Colin A Russell, Derek J Smith, Andrew Rambaut
Published 2014-02-01

Unifying viral genetics and human transportation data to predict the global transmission dynamics of human influenza H3N2.

by Philippe Lemey, Andrew Rambaut, Trevor Bedford, Nuno Faria, Filip Bielejec, Guy Baele, Colin A Russell, Derek J Smith, Oliver G Pybus, Dirk Brockmann, Marc A Suchard
Published 2014-02-01