A parsimony approach to biological pathway reconstruction/inference for genomes and metagenomes.

by Yuzhen Ye, Thomas G Doak
Published 2009-08-01

Limited Mutation-Rate Variation Within the Paramecium aurelia Species Complex

by Hongan Long, Thomas G. Doak, Michael Lynch
Published 2018-07-01

Bats use magnetite to detect the earth's magnetic field.

by Richard A Holland, Joseph L Kirschvink, Thomas G Doak, Martin Wikelski
Published 2008-01-01

Diverse CRISPRs evolving in human microbiomes.

by Mina Rho, Yu-Wei Wu, Haixu Tang, Thomas G Doak, Yuzhen Ye
Published 2012-01-01

Strand-specific community RNA-seq reveals prevalent and dynamic antisense transcription in human gut microbiota

by Guanhui eBao, Mingjie eWang, Thomas G. Doak, Yuzhen eYe
Published 2015-09-01

Genomic and Metagenomic Analysis of Diversity-Generating Retroelements Associated with Treponema denticola

by Sutichot eNimkulrat, Heewook eLee, Thomas G DOAK, Yuzhen eYe
Published 2016-06-01

The Rate and Spectrum of Spontaneous Mutations in Mycobacterium smegmatis, a Bacterium Naturally Devoid of the Postreplicative Mismatch Repair Pathway

by Sibel Kucukyildirim, Hongan Long, Way Sung, Samuel F. Miller, Thomas G. Doak, Michael Lynch
Published 2016-07-01

Low Base-Substitution Mutation Rate but High Rate of Slippage Mutations in the Sequence Repeat-Rich Genome of Dictyostelium discoideum

by Sibel Kucukyildirim, Megan Behringer, Way Sung, Debra A. Brock, Thomas G. Doak, Hatice Mergen, David C. Queller, Joan E. Strassmann, Michael Lynch
Published 2020-09-01

The pathway to detangle a scrambled gene.

by Matthias Möllenbeck, Yi Zhou, Andre R O Cavalcanti, Franziska Jönsson, Brian P Higgins, Wei-Jen Chang, Stefan Juranek, Thomas G Doak, Grzegorz Rozenberg, Hans J Lipps, Laura F Landweber
Published 2008-06-01

The Oxytricha trifallax macronuclear genome: a complex eukaryotic genome with 16,000 tiny chromosomes.

by Estienne C Swart, John R Bracht, Vincent Magrini, Patrick Minx, Xiao Chen, Yi Zhou, Jaspreet S Khurana, Aaron D Goldman, Mariusz Nowacki, Klaas Schotanus, Seolkyoung Jung, Robert S Fulton, Amy Ly, Sean McGrath, Kevin Haub, Jessica L Wiggins, Donna Storton, John C Matese, Lance Parsons, Wei-Jen Chang, Michael S Bowen, Nicholas A Stover, Thomas A Jones, Sean R Eddy, Glenn A Herrick, Thomas G Doak, Richard K Wilson, Elaine R Mardis, Laura F Landweber
Published 2013-01-01