OpenHiCAMM: High-Content Screening Software for Complex Microscope Imaging Workflows

by Benjamin W. Booth, Charles McParland, Keith Beattie, William W. Fisher, Ann S. Hammonds, Susan E. Celniker, Erwin Frise
Published 2018-04-01

Computational identification of diverse mechanisms underlying transcription factor-DNA occupancy.

by Qiong Cheng, Majid Kazemian, Hannah Pham, Charles Blatti, Susan E Celniker, Scot A Wolfe, Michael H Brodsky, Saurabh Sinha
Published 2013-01-01

Genome-wide Analysis of Drosophila Circular RNAs Reveals Their Structural and Sequence Properties and Age-Dependent Neural Accumulation

by Jakub O. Westholm, Pedro Miura, Sara Olson, Sol Shenker, Brian Joseph, Piero Sanfilippo, Susan E. Celniker, Brenton R. Graveley, Eric C. Lai
Published 2014-12-01

Thirdhand cigarette smoke leads to age‐dependent and persistent alterations in the cecal microbiome of mice

by Li He, Yan‐Xia Zhou, Yuqing Zhang, Bo Hang, Hang Chang, Suzaynn F. Schick, Susan E. Celniker, Yankai Xia, Antoine M. Snijders, Jian‐Hua Mao
Published 2021-06-01

Selective time-dependent changes in activity and cell-specific gene expression in human postmortem brain

by Fabien Dachet, James B. Brown, Tibor Valyi-Nagy, Kunwar D. Narayan, Anna Serafini, Nathan Boley, Thomas R. Gingeras, Susan E. Celniker, Gayatry Mohapatra, Jeffrey A. Loeb
Published 2021-03-01

Quantitative analysis of the Drosophila segmentation regulatory network using pattern generating potentials.

by Majid Kazemian, Charles Blatti, Adam Richards, Michael McCutchan, Noriko Wakabayashi-Ito, Ann S Hammonds, Susan E Celniker, Sudhir Kumar, Scot A Wolfe, Michael H Brodsky, Saurabh Sinha
Published 2010-08-01

Correction: Quantitative Analysis of the Segmentation Regulatory Network Using Pattern Generating Potentials.

by Majid Kazemian, Charles Blatti, Adam Richards, Michael McCutchan, Noriko Wakabayashi-Ito, Ann S. Hammonds, Susan E. Celniker, Sudhir Kumar, Scot A. Wolfe, Michael H. Brodsky, Saurabh Sinha
Published 2013-10-01

Functional evolution of cis-regulatory modules at a homeotic gene in Drosophila.

by Margaret C W Ho, Holly Johnsen, Sara E Goetz, Benjamin J Schiller, Esther Bae, Diana A Tran, Andrey S Shur, John M Allen, Christoph Rau, Welcome Bender, William W Fisher, Susan E Celniker, Robert A Drewell
Published 2009-11-01

Transcription Factor Networks in Drosophila melanogaster

by David Y. Rhee, Dong-Yeon Cho, Bo Zhai, Matthew Slattery, Lijia Ma, Julian Mintseris, Christina Y. Wong, Kevin P. White, Susan E. Celniker, Teresa M. Przytycka, Steven P. Gygi, Robert A. Obar, Spyros Artavanis-Tsakonas
Published 2014-09-01

Global Patterns of Tissue-Specific Alternative Polyadenylation in Drosophila

by Peter Smibert, Pedro Miura, Jakub O. Westholm, Sol Shenker, Gemma May, Michael O. Duff, Dayu Zhang, Brian D. Eads, Joe Carlson, James B. Brown, Robert C. Eisman, Justen Andrews, Thomas Kaufman, Peter Cherbas, Susan E. Celniker, Brenton R. Graveley, Eric C. Lai
Published 2012-03-01

Global Patterns of Tissue-Specific Alternative Polyadenylation in Drosophila

by Peter Smibert, Pedro Miura, Jakub O. Westholm, Sol Shenker, Gemma May, Michael O. Duff, Dayu Zhang, Brian D. Eads, Joe Carlson, James B. Brown, Robert C. Eisman, Justen Andrews, Thomas Kaufman, Peter Cherbas, Susan E. Celniker, Brenton R. Graveley, Eric C. Lai
Published 2013-03-01

Genetic and metabolic links between the murine microbiome and memory

by Jian-Hua Mao, Young-Mo Kim, Yan-Xia Zhou, Dehong Hu, Chenhan Zhong, Hang Chang, Colin J. Brislawn, Sarah Fansler, Sasha Langley, Yunshan Wang, B. Y. Loulou Peisl, Susan E. Celniker, David W. Threadgill, Paul Wilmes, Galya Orr, Thomas O. Metz, Janet K. Jansson, Antoine M. Snijders
Published 2020-04-01

Correction to: Genetic and metabolic links between the murine microbiome and memory

by Jian-Hua Mao, Young-Mo Kim, Yan-Xia Zhou, Dehong Hu, Chenhan Zhong, Hang Chang, Colin J. Brislawn, Sarah Fansler, Sasha Langley, Yunshan Wang, B. Y. Loulou Peisl, Susan E. Celniker, David W. Threadgill, Paul Wilmes, Galya Orr, Thomas O. Metz, Janet K. Jansson, Antoine M. Snijders
Published 2020-05-01

Correction to: DNA copy number evolution in Drosophila cell lines

by Hangnoh Lee, C. Joel McManus, Dong-Yeon Cho, Matthew Eaton, Fioranna Renda, Maria Patrizia Somma, Lucy Cherbas, Gemma May, Sara Powell, Dayu Zhang, Lijun Zhan, Alissa Resch, Justen Andrews, Susan E. Celniker, Peter Cherbas, Teresa M. Przytycka, Maurizio Gatti, Brian Oliver, Brenton Graveley, David MacAlpine
Published 2019-03-01

Transcription factors bind thousands of active and inactive regions in the Drosophila blastoderm.

by Xiao-yong Li, Stewart MacArthur, Richard Bourgon, David Nix, Daniel A Pollard, Venky N Iyer, Aaron Hechmer, Lisa Simirenko, Mark Stapleton, Cris L Luengo Hendriks, Hou Cheng Chu, Nobuo Ogawa, William Inwood, Victor Sementchenko, Amy Beaton, Richard Weiszmann, Susan E Celniker, David W Knowles, Tom Gingeras, Terence P Speed, Michael B Eisen, Mark D Biggin
Published 2008-02-01

Correction: Transcription Factors Bind Thousands of Active and Inactive Regions in the Drosophila Blastoderm.

by Xiao-yong Li, Stewart MacArthur, Richard Bourgon, David Nix, Daniel A Pollard, Venky N Iyer, Aaron Hechmer, Lisa Simirenko, Mark Stapleton, Cris L Luengo Hendriks, Hou Cheng Chu, Nobuo Ogawa, William Inwood, Victor Sementchenko, Amy Beaton, Richard Weiszmann, Susan E Celniker, David W Knowles, Tom Gingeras, Terence P Speed, Michael B Eisen, Mark D Biggin
Published 2008-07-01