Phylogeny-corrected identification of microbial gene families relevant to human gut colonization.

by Patrick H Bradley, Stephen Nayfach, Katherine S Pollard
Published 2018-08-01

A most wanted list of conserved microbial protein families with no known domains.

by Stacia K Wyman, Aram Avila-Herrera, Stephen Nayfach, Katherine S Pollard
Published 2018-01-01

Automated and Accurate Estimation of Gene Family Abundance from Shotgun Metagenomes.

by Stephen Nayfach, Patrick H Bradley, Stacia K Wyman, Timothy J Laurent, Alex Williams, Jonathan A Eisen, Katherine S Pollard, Thomas J Sharpton
Published 2015-11-01

Diversity, evolution, and classification of virophages uncovered through global metagenomics

by David Paez-Espino, Jinglie Zhou, Simon Roux, Stephen Nayfach, Georgios A. Pavlopoulos, Frederik Schulz, Katherine D. McMahon, David Walsh, Tanja Woyke, Natalia N. Ivanova, Emiley A. Eloe-Fadrosh, Susannah G. Tringe, Nikos C. Kyrpides
Published 2019-12-01

Single-cell genomics of co-sorted Nanoarchaeota suggests novel putative host associations and diversification of proteins involved in symbiosis

by Jessica K. Jarett, Stephen Nayfach, Mircea Podar, William Inskeep, Natalia N. Ivanova, Jacob Munson-McGee, Frederik Schulz, Mark Young, Zackary J. Jay, Jacob P. Beam, Nikos C. Kyrpides, Rex R. Malmstrom, Ramunas Stepanauskas, Tanja Woyke
Published 2018-09-01

Influence of the polar light cycle on seasonal dynamics of an Antarctic lake microbial community

by Pratibha Panwar, Michelle A. Allen, Timothy J. Williams, Alyce M. Hancock, Sarah Brazendale, James Bevington, Simon Roux, David Páez-Espino, Stephen Nayfach, Maureen Berg, Frederik Schulz, I-Min A. Chen, Marcel Huntemann, Nicole Shapiro, Nikos C. Kyrpides, Tanja Woyke, Emiley A. Eloe-Fadrosh, Ricardo Cavicchioli
Published 2020-08-01

Ecology and molecular targets of hypermutation in the global microbiome

by Simon Roux, Blair G. Paul, Sarah C. Bagby, Stephen Nayfach, Michelle A. Allen, Graeme Attwood, Ricardo Cavicchioli, Ludmila Chistoserdova, Robert J. Gruninger, Steven J. Hallam, Maria E. Hernandez, Matthias Hess, Wen-Tso Liu, Tim A. McAllister, Michelle A. O’Malley, Xuefeng Peng, Virginia I. Rich, Scott R. Saleska, Emiley A. Eloe-Fadrosh
Published 2021-05-01